Basic Information
Gene Model:Bol007436
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000261
Sequence:
 | 
Gene Structure
Nucleotide Length:1487 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:-
Location:C08: 23408017 : 23409503
Gene CDSs(3): 1-90 | 447-878 | 960-1487 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:4.10.280.10no description 138 206 0.0001IPR011598Helix-loop-helix DNA-binding
Segsegseg 220 239 NANot foundNot found
Segsegseg 190 203 NANot foundNot found
Segsegseg 115 139 NANot foundNot found
ProfileScanPS50888HLH 127 194 11.700IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 148 199 5.2e-09IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 132 211 4.5e-15IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 143 194 5.3e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q56YJ81e-150FAMA_ARATH Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1
TrEMBL
Best HitE_value Description
A7Q7591e-110A7Q759_VITVI Chromosome chr5 scaffold_58, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031699001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G326403e-13K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23192536..23758888 (+)A.thalianaChr3:8672774..8784368 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:23286761..23767993 (+)B.rapaA07:7913038..8127560 (-)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2414087152368718211Chr3Subgenome_III(LF)18
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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