Basic Information
Gene Model:Bol007356
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000262
Sequence:
 | 
Gene Structure
Nucleotide Length:4913 bp
Transcript Length:3567 bp
Protein Length:1188 aa
Strand:+
Location:Scaffold000262: 57229 : 62141
Gene CDSs(11): 1-156 | 251-326 | 419-1602 | 1859-1930 | 2113-2190 | 2306-3176 | 3262-3392 | 3542-3733 | 3917-4405 | 4514-4723 | 4806-4913 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00490no description 1046 1129 4.7e-17IPR001650DNA/RNA helicase, C-terminal
HMMSmartSM00184no description 916 954 7.2e-05IPR001841Zinc finger, RING-type
HMMSmartSM00487no description 488 780 5.3e-29IPR014001DEAD-like helicase, N-terminal
Gene3DG3DSA:3.30.40.10no description 894 969 9.8e-10Not foundNot found
Gene3DG3DSA:3.40.50.300no description 1008 1169 6.6e-05Not foundNot found
Segsegseg 691 698 NANot foundNot found
Segsegseg 401 415 NANot foundNot found
Segsegseg 17 39 NANot foundNot found
HMMPfamPF00271Helicase_C 1051 1129 1.4e-21IPR001650DNA/RNA helicase, C-terminal
HMMPfamPF00097zf-C3HC4 916 953 2.1e-05IPR018957Zinc finger, C3HC4 RING-type
HMMPfamPF00176SNF2_N 495 888 1e-47IPR000330SNF2-related
superfamilySSF57850RING/U-box 891 960 4.9e-11Not foundNot found
superfamilySSF52540P-loop containing nu 1005 1166 6.7e-19Not foundNot found
superfamilySSF52540P-loop containing nu 473 774 3.6e-19Not foundNot found
HMMPantherPTHR10799:SF62DNA REPAIR HELICASE 328 1187 9.6e-255Not foundNot found
HMMPantherPTHR10799ATP-DEPENDENT HELICA 328 1187 9.6e-255Not foundNot found
ProfileScanPS51194HELICASE_CTER 1010 1182 14.861IPR001650DNA/RNA helicase, C-terminal
ProfileScanPS50089ZF_RING_2 916 955 10.247IPR001841Zinc finger, RING-type
ProfileScanPS51192HELICASE_ATP_BIND_1 507 772 11.943IPR014021Helicase, superfamily 1/2, ATP-binding domain
Gene Ontology
GO TermGO TypeDescription
GO:0003676 Molecular Function nucleic acid binding
GO:0003677 Molecular Function DNA binding
GO:0004386 Molecular Function helicase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9FNI61e-103SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3H7J30.0B3H7J3_ARATH Uncharacterized protein At1g61140.3 OS=Arabidopsis thaliana GN=At1g61140 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pic:PICST_491797e-86K01509E3.6.1.3adenosinetriphosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL339(32 genes,8 taxa):Arabidopsis thalianaAT1G11100.1
ORTHOMCL339(32 genes,8 taxa):Arabidopsis thalianaAT1G50410.1
ORTHOMCL339(32 genes,8 taxa):Arabidopsis thalianaAT1G61140.1
ORTHOMCL339(32 genes,8 taxa):Arabidopsis thalianaAT3G16600.1
ORTHOMCL339(32 genes,8 taxa):Arabidopsis thalianaAT3G20010.1
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol007356
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol010155
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol014069
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol018165
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol026674
ORTHOMCL339(32 genes,8 taxa):Brassica oleraceaBol035440
ORTHOMCL339(32 genes,8 taxa):Brassica rapaBra001771
ORTHOMCL339(32 genes,8 taxa):Brassica rapaBra018847
ORTHOMCL339(32 genes,8 taxa):Brassica rapaBra031452
ORTHOMCL339(32 genes,8 taxa):Brassica rapaBra035824
ORTHOMCL339(32 genes,8 taxa):Brassica rapaBra038573
ORTHOMCL339(32 genes,8 taxa):Vitis viniferaGSVIVT01006339001
ORTHOMCL339(32 genes,8 taxa):Vitis viniferaGSVIVT01034370001
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs01t0779400-01
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs01t0779400-02
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs04t0629300-01
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs04t0629300-02
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs08t0180300-01
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs08t0180300-02
ORTHOMCL339(32 genes,8 taxa):Oryza sativaOs08t0180300-03
ORTHOMCL339(32 genes,8 taxa):Populus trichocarpaPOPTR_0004s03790.1
ORTHOMCL339(32 genes,8 taxa):Populus trichocarpaPOPTR_0004s03790.2
ORTHOMCL339(32 genes,8 taxa):Populus trichocarpaPOPTR_0011s04620.1
ORTHOMCL339(32 genes,8 taxa):Sorghum bicolorSb03g036380.1
ORTHOMCL339(32 genes,8 taxa):Sorghum bicolorSb06g029476.1
ORTHOMCL339(32 genes,8 taxa):Sorghum bicolorSb07g005030.1
ORTHOMCL339(32 genes,8 taxa):Carica papayaevm.TU.supercontig_27.89
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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