Basic Information
Gene Model:Bol007350
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000263
Sequence:
 | 
Gene Structure
Nucleotide Length:5163 bp
Transcript Length:3843 bp
Protein Length:1280 aa
Strand:-
Location:C01: 35771980 : 35777142
Gene CDSs(7): 1-1743 | 2270-2356 | 2439-3057 | 3139-3293 | 3765-4059 | 4139-4963 | 5045-5163 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 454 466 NANot foundNot found
Segsegseg 714 728 NANot foundNot found
Segsegseg 1179 1192 NANot foundNot found
HMMSmartSM00382no description 1058 1243 6.3e-13IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 443 616 6.3e-11IPR003593ATPase, AAA+ type, core
HMMPfamPF00005ABC_tran 1059 1242 3.5e-48IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 444 615 5.7e-45IPR003439ABC transporter-like
HMMPfamPF00664ABC_membrane 715 987 9.7e-17IPR001140ABC transporter, transmembrane region
HMMPfamPF00664ABC_membrane 101 372 4.2e-10IPR001140ABC transporter, transmembrane region
HMMPantherPTHR19242ATP-BINDING CASSETTE 17 1269 0Not foundNot found
HMMPantherPTHR19242:SF20MULTIDRUG RESISTANCE 17 1269 0Not foundNot found
ProfileScanPS50929ABC_TM1F 717 995 34.972IPR017940ABC transporter integral membrane type 1
ProfileScanPS50929ABC_TM1F 101 384 24.079IPR017940ABC transporter integral membrane type 1
ProfileScanPS50893ABC_TRANSPORTER_2 1034 1266 17.080IPR003439ABC transporter-like
ProfileScanPS50893ABC_TRANSPORTER_2 416 639 22.102IPR003439ABC transporter-like
PatternScanPS00211ABC_TRANSPORTER_1 541 555 NAIPR017871ABC transporter, conserved site
Gene3DG3DSA:3.40.50.300no description 997 1264 5e-61Not foundNot found
Gene3DG3DSA:3.40.50.300no description 408 666 5.1e-63Not foundNot found
superfamilySSF90123Multidrug resistance 76 404 5e-27IPR011527ABC transporter, transmembrane region, type 1
superfamilySSF90123Multidrug resistance 689 1010 3.7e-48IPR011527ABC transporter, transmembrane region, type 1
superfamilySSF52540P-loop containing nu 1021 1266 2.6e-54Not foundNot found
superfamilySSF52540P-loop containing nu 416 629 6.8e-57Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
GO:0042626 Molecular Function ATPase activity, coupled to transmembrane movement of substances
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q8VZZ40.0AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q75Q020.0Q75Q02_THLCA Multidrug resistance-associated protein OS=Thlaspi caerulescens GN=TcMRP3 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
gga:3954160.0K05665ABCC1ATP-binding cassette, subfamily C (CFTR/MRP), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT1G04120.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT1G30400.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT1G30410.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT1G30420.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT2G07680.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT2G34660.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT2G47800.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G13080.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G13090.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G13100.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G21250.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G59140.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G60160.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G60970.1
ORTHOMCL14(158 genes,8 taxa):Arabidopsis thalianaAT3G62700.1
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol007350
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol010244
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol015782
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol015783
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol016110
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol018795
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol020511
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol022556
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol022557
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol023826
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol027378
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol029753
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol035509
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol035512
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol037076
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol038382
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol040869
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol043186
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol044488
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol044609
ORTHOMCL14(158 genes,8 taxa):Brassica oleraceaBol045146
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra001488
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra001490
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra003402
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra005402
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra007434
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra007695
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra010773
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra012617
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra014879
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra015291
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra018722
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra023893
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra031267
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra032248
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra032385
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra032386
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra034706
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra036682
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra039348
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra039368
ORTHOMCL14(158 genes,8 taxa):Brassica rapaBra039369
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01010326001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01014628001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01014629001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01014631001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01014632001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01014633001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01015960001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01016879001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01016880001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01018403001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019467001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019469001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019471001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019473001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019475001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01019476001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01021589001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01021594001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01021595001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01027990001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01028440001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01028722001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01028744001
ORTHOMCL14(158 genes,8 taxa):Vitis viniferaGSVIVT01037789001
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs01t0173900-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs01t0356400-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs01t0902100-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs02t0288400-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs02t0288700-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs03t0142800-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs03t0142800-02
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs04t0209200-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs04t0209300-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs04t0588700-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs04t0620066-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs05t0196100-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs05t0196100-02
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs06t0158900-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs06t0184766-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs06t0561800-00
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs11t0155600-01
ORTHOMCL14(158 genes,8 taxa):Oryza sativaOs12t0562700-00
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0001s10240.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0001s37330.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0001s37340.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0002s20700.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0002s25710.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s02950.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s02950.2
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s13560.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s18100.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s19650.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s19660.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s19670.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s19680.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0003s19800.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0004s03470.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0008s17960.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0010s06540.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0011s04290.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0011s09360.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0011s09370.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0012s01200.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0012s01210.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0014s12500.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0014s17830.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0014s18670.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0015s06010.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0015s06010.2
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0016s13080.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0018s14660.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0249s00200.1
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_0249s00200.2
ORTHOMCL14(158 genes,8 taxa):Populus trichocarpaPOPTR_1557s00200.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb01g038917.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb01g045940.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb01g047430.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb03g004300.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb03g014130.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb03g022890.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb06g002070.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb06g002080.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb06g014250.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb06g026830.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb06g028880.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb07g027770.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb09g006080.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb10g004070.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb10g005720.1
ORTHOMCL14(158 genes,8 taxa):Sorghum bicolorSb10g022190.1
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.contig_33848.1
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_10.60
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_12.188
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_122.19
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_131.42
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_17.64
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_17.66
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_43.1
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_87.35
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_9.219
ORTHOMCL14(158 genes,8 taxa):Carica papayaevm.TU.supercontig_97.97
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..37387064 (-)A.thalianaChr3:3092023..4731803 (+)219
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:35469356..37231552 (+)B.rapaA05:2022902..3035072 (+)90
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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