Basic Information
Gene Model:Bol007333
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000263
Sequence:
 | 
Gene Structure
Nucleotide Length:1919 bp
Transcript Length:1164 bp
Protein Length:387 aa
Strand:+
Location:C01: 35922975 : 35924893
Gene CDSs(4): 1-234 | 305-541 | 948-1315 | 1595-1919 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 38 378 4.4e-155Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 38 378 4.4e-155IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 3 355 1.9e-67IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 78 358 1.2e-55IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 83 329 1.1e-35IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 83 91 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene3DG3DSA:3.60.40.10no description 29 361 3.3e-56IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LHJ90.0P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q4091e-178A7Q409_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029494001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429702e-28K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6172(10 genes,6 taxa):Arabidopsis thalianaAT3G12620.1
ORTHOMCL6172(10 genes,6 taxa):Brassica oleraceaBol007333
ORTHOMCL6172(10 genes,6 taxa):Brassica oleraceaBol010287
ORTHOMCL6172(10 genes,6 taxa):Brassica rapaBra034749
ORTHOMCL6172(10 genes,6 taxa):Brassica rapaBra038738
ORTHOMCL6172(10 genes,6 taxa):Vitis viniferaGSVIVT01032637001
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0008s04670.1
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s22180.1
ORTHOMCL6172(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s22180.2
ORTHOMCL6172(10 genes,6 taxa):Carica papayaevm.TU.supercontig_1.284
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..37387064 (-)A.thalianaChr3:3092023..4731803 (+)219
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:35469356..37231552 (+)B.rapaA05:2022902..3035072 (+)90
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1262040092754011347Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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