Basic Information
Gene Model:Bol007207
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000265
Sequence:
 | 
Gene Structure
Nucleotide Length:3488 bp
Transcript Length:1773 bp
Protein Length:590 aa
Strand:-
Location:C07: 30657130 : 30660617
Gene CDSs(13): 1-191 | 404-467 | 570-803 | 885-1028 | 1142-1480 | 1659-1734 | 1841-1940 | 2056-2089 | 2175-2259 | 2355-2419 | 2520-2618 | 2789-2854 | 3213-3488 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01301GPH_sucrose: sucrose 61 581 7.8e-144IPR005989Sucrose/H+ symporter, plant
Segsegseg 554 572 NANot foundNot found
Segsegseg 261 270 NANot foundNot found
HMMPantherPTHR19432:SF2SUCROSE TRANSPORT 32 589 1.4e-203Not foundNot found
HMMPantherPTHR19432SUGAR TRANSPORTER 32 589 1.4e-203Not foundNot found
Segsegseg 36 46 NANot foundNot found
HMMPfamPF07690MFS_1 69 529 9.3e-12IPR011701Major facilitator superfamily MFS-1
superfamilySSF103473MFS general substrat 39 576 1.4e-26IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005887 Cellular Component integral to plasma membrane
GO:0008515 Molecular Function sucrose transmembrane transporter activity
GO:0015770 Biological Process sucrose transport
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O806050.0SUC3_ARATH Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WV100.0Q0WV10_ARATH Sucrose transporter OS=Arabidopsis thaliana GN=At2g02860 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2412(14 genes,8 taxa):Arabidopsis thalianaAT2G02860.1
ORTHOMCL2412(14 genes,8 taxa):Brassica oleraceaBol007207
ORTHOMCL2412(14 genes,8 taxa):Brassica oleraceaBol015177
ORTHOMCL2412(14 genes,8 taxa):Brassica rapaBra024802
ORTHOMCL2412(14 genes,8 taxa):Brassica rapaBra026576
ORTHOMCL2412(14 genes,8 taxa):Vitis viniferaGSVIVT01020031001
ORTHOMCL2412(14 genes,8 taxa):Oryza sativaOs03t0170900-01
ORTHOMCL2412(14 genes,8 taxa):Oryza sativaOs03t0170900-02
ORTHOMCL2412(14 genes,8 taxa):Populus trichocarpaPOPTR_0008s14760.1
ORTHOMCL2412(14 genes,8 taxa):Populus trichocarpaPOPTR_0010s10360.1
ORTHOMCL2412(14 genes,8 taxa):Sorghum bicolorSb01g022430.1
ORTHOMCL2412(14 genes,8 taxa):Sorghum bicolorSb01g045720.1
ORTHOMCL2412(14 genes,8 taxa):Sorghum bicolorSb04g038030.1
ORTHOMCL2412(14 genes,8 taxa):Carica papayaevm.TU.supercontig_183.31
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30100273..31263944 (+)A.thalianaChr2:440636..1332419 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30243097..32091658 (+)B.rapaA09:27867810..28733000 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
KAT2G02860828352832455Chr2Subgenome_III(LF)97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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