Basic Information
Gene Model:Bol007190
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000265
Sequence:
 | 
Gene Structure
Nucleotide Length:2065 bp
Transcript Length:669 bp
Protein Length:222 aa
Strand:+
Location:C07: 30498153 : 30500217
Gene CDSs(5): 1-100 | 1035-1263 | 1549-1568 | 1666-1739 | 1820-2065 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF57903FYVE/PHD zinc finger 161 222 1.3e-10IPR011011Zinc finger, FYVE/PHD-type
ProfileScanPS50016ZF_PHD_2 166 218 9.134IPR019787Zinc finger, PHD-finger
HMMPantherPTHR12321CPG BINDING PROTEIN 130 219 8.7e-10Not foundNot found
HMMSmartSM00249no description 168 216 6.1e-07IPR001965Zinc finger, PHD-type
Segsegseg 49 66 NANot foundNot found
Segsegseg 147 164 NANot foundNot found
HMMPfamPF00628PHD 168 218 5.7e-14IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.10no description 161 218 2e-14Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O814882e-53Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8S8M94e-86Q8S8M9_ARATH Putative PHD-type zinc finger protein OS=Arabidopsis thaliana GN=At2g02470 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dmo:Dmoj_GI125294e-09K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30100273..31263944 (+)A.thalianaChr2:440636..1332419 (+)75
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30243097..32091658 (+)B.rapaA09:27867810..28733000 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
KAT2G02470652580654915Chr2Subgenome_III(LF)97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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