Basic Information
Gene Model:Bol007171
Gene Family:Plant Defensins Gene Families
Chromosome:C07
Scaffold:Scaffold000265
Sequence:
 | 
Gene Structure
Nucleotide Length:558 bp
Transcript Length:234 bp
Protein Length:77 aa
Strand:+
Location:C07: 30318955 : 30319512
Gene CDSs(2): 1-64 | 389-558 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00304Gamma-thionin 31 77 3.1e-29IPR008176Gamma thionin
Gene3DG3DSA:3.30.30.10no description 31 77 4.6e-15Not foundNot found
superfamilySSF57095Scorpion toxin-like 31 77 6.1e-14Not foundNot found
HMMSmartSM00505no description 32 77 4.8e-12IPR003614Knottin
Segsegseg 58 71 NANot foundNot found
PatternScanPS00940GAMMA_THIONIN 31 54 NAIPR008176Gamma thionin
Gene Ontology
GO TermGO TypeDescription
GO:0006952 Biological Process defense response
Swiss-Prot
Best HitE_value Description
Q391822e-34DEF02_ARATH Defensin-like protein 2 OS=Arabidopsis thaliana GN=PDF2.2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q394034e-36Q39403_BRACM Protease inhibitor II OS=Brassica campestris PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5904(10 genes,7 taxa):Arabidopsis thalianaAT2G02100.1
ORTHOMCL5904(10 genes,7 taxa):Arabidopsis thalianaAT2G02130.1
ORTHOMCL5904(10 genes,7 taxa):Brassica oleraceaBol007171
ORTHOMCL5904(10 genes,7 taxa):Brassica oleraceaBol015123
ORTHOMCL5904(10 genes,7 taxa):Brassica rapaBra024832
ORTHOMCL5904(10 genes,7 taxa):Brassica rapaBra026615
ORTHOMCL5904(10 genes,7 taxa):Vitis viniferaGSVIVT01010274001
ORTHOMCL5904(10 genes,7 taxa):Oryza sativaOs03t0130300-01
ORTHOMCL5904(10 genes,7 taxa):Sorghum bicolorSb01g048380.1
ORTHOMCL5904(10 genes,7 taxa):Carica papayaevm.TU.supercontig_2.88
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:29756676..30405417 (+)A.thalianaChr2:249687..444276 (+)27
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30243097..32091658 (+)B.rapaA09:27867810..28733000 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
KAT2G02100528350529108Chr2Subgenome_III(LF)97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo