Basic Information
Gene Model:Bol007117
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C02
Scaffold:Scaffold000266
Sequence:
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Gene Structure
Nucleotide Length:1889 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:-
Location:C02: 5219526 : 5221414
Gene CDSs(8): 1-235 | 324-440 | 566-657 | 902-1002 | 1077-1181 | 1392-1500 | 1679-1729 | 1809-1889 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10657ROTAMASE 101 250 3e-16Not foundNot found
HMMPfamPF00581Rhodanese 193 288 1.1e-15IPR001763Rhodanese-like
HMMPfamPF00639Rotamase 97 180 9.8e-19IPR000297Peptidyl-prolyl cis-trans isomerase, PpiC-type
ProfileScanPS50206RHODANESE_3 202 294 16.738IPR001763Rhodanese-like
ProfileScanPS50198PPIC_PPIASE_2 90 180 18.626IPR000297Peptidyl-prolyl cis-trans isomerase, PpiC-type
Segsegseg 77 88 NANot foundNot found
Segsegseg 8 27 NANot foundNot found
Gene3DG3DSA:3.40.250.10no description 164 291 4.2e-22IPR001763Rhodanese-like
HMMSmartSM00450no description 188 291 2.9e-19IPR001763Rhodanese-like
superfamilySSF54534FKBP-like 83 180 6.9e-22Not foundNot found
superfamilySSF52821Rhodanese/Cell cycle 164 294 1.4e-25IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription
GO:0016853 Molecular Function isomerase activity
Swiss-Prot
Best HitE_value Description
Q9KDN48e-12PRSA_BACHD Foldase protein prsA OS=Bacillus halodurans GN=prsA PE=3 SV=1
TrEMBL
Best HitE_value Description
Q93WI01e-123Q93WI0_ARATH Putative peptidyl-prolyl cis-trans isomerase OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7981151e-08K11996MOCS3, UBA4, moeBadenylyltransferase and sulfurtransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8461(9 genes,8 taxa):Arabidopsis thalianaAT5G19370.1
ORTHOMCL8461(9 genes,8 taxa):Brassica oleraceaBol007117
ORTHOMCL8461(9 genes,8 taxa):Brassica oleraceaBol034552
ORTHOMCL8461(9 genes,8 taxa):Brassica rapaBra006503
ORTHOMCL8461(9 genes,8 taxa):Vitis viniferaGSVIVT01037292001
ORTHOMCL8461(9 genes,8 taxa):Oryza sativaOs07t0687500-01
ORTHOMCL8461(9 genes,8 taxa):Populus trichocarpaPOPTR_0009s07340.1
ORTHOMCL8461(9 genes,8 taxa):Sorghum bicolorSb02g043490.1
ORTHOMCL8461(9 genes,8 taxa):Carica papayaevm.TU.supercontig_157.56
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:3260082..5447020 (+)A.thalianaChr5:4729319..6673282 (+)218
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G1937065241206526706Chr5Subgenome_I556
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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