Basic Information
Gene Model:Bol007032
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000268
Sequence:
 | 
Gene Structure
Nucleotide Length:603 bp
Transcript Length:603 bp
Protein Length:200 aa
Strand:+
Location:C08: 21899115 : 21899717
Gene CDSs(1): 1-603 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01988DUF125 30 194 2.4e-61IPR008217Protein of unknown function DUF125, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P163135e-46NO21_SOYBN Nodulin-21 OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M2C02e-84Q9M2C0_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=F23N14_40 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:21556685..22045991 (+)A.thalianaChr1:28623443..28911564 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:21174904..21922281 (+)B.rapaA08:2109335..2411961 (-)30
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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