Basic Information
Gene Model:Bol006895
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000270
Sequence:
 | 
Gene Structure
Nucleotide Length:1995 bp
Transcript Length:1185 bp
Protein Length:394 aa
Strand:-
Location:C04: 231369 : 233363
Gene CDSs(7): 1-271 | 370-521 | 628-786 | 1045-1279 | 1432-1548 | 1653-1715 | 1808-1995 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 20 153 3.2e-14IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 192 321 1e-10IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 217 328 9.9e-09Not foundNot found
superfamilySSF103481Multidrug resistance 45 160 3.6e-08Not foundNot found
Segsegseg 284 320 NANot foundNot found
Segsegseg 136 147 NANot foundNot found
Segsegseg 167 174 NANot foundNot found
Segsegseg 48 59 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1639e-585NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
O222040.0O22204_ARATH Putative integral membrane protein nodulin OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12799(6 genes,3 taxa):Arabidopsis thalianaAT2G40900.1
ORTHOMCL12799(6 genes,3 taxa):Brassica oleraceaBol005135
ORTHOMCL12799(6 genes,3 taxa):Brassica oleraceaBol006895
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra000212
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra004592
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra016963
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:26806..1179808 (+)A.thalianaChr2:16879216..17739085 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G409001706312217065684Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo