Basic Information
Gene Model:Bol006805
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000272
Sequence:
 | 
Gene Structure
Nucleotide Length:2689 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:-
Location:C09: 13240830 : 13243518
Gene CDSs(4): 1-124 | 341-489 | 1555-2033 | 2551-2689 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00332no description 69 288 6.7e-05IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 58 291 1.1e-18IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 76 294 3.4e-15IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF4PROTEIN PHOSPHATASE 77 294 2.2e-104Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 77 294 2.2e-104IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 222 283 2.1e-12IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 122 133 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9T0101e-124P2C54_ARATH Probable protein phosphatase 2C 54 OS=Arabidopsis thaliana GN=At4g11040 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RIK12e-24B9RIK1_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1579770 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15797703e-25K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18795(3 genes,3 taxa):Arabidopsis thalianaAT4G11040.1
ORTHOMCL18795(3 genes,3 taxa):Brassica oleraceaBol006805
ORTHOMCL18795(3 genes,3 taxa):Brassica rapaBra035258
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:12584291..14284392 (-)A.thalianaChr4:6276998..6967093 (+)53
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:12584291..13724761 (+)B.rapaA10:14010755..14696189 (+)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
PAT4G1104067451616746698Chr4Subgenome_III(LF)56
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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