Basic Information
Gene Model:Bol006759
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000273
Sequence:
 | 
Gene Structure
Nucleotide Length:5672 bp
Transcript Length:1767 bp
Protein Length:588 aa
Strand:-
Location:C04: 29054566 : 29060237
Gene CDSs(12): 1-215 | 292-357 | 433-537 | 975-1214 | 1626-1694 | 4049-4273 | 4354-4419 | 4492-4605 | 4707-4917 | 4998-5156 | 5241-5392 | 5528-5672 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 421 430 NANot foundNot found
Segsegseg 281 293 NANot foundNot found
Segsegseg 167 180 NANot foundNot found
Segsegseg 55 68 NANot foundNot found
Segsegseg 83 95 NANot foundNot found
HMMPfamPF00892DUF6 265 397 0.002IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 30 124 4.9e-06IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 289 402 0.00035Not foundNot found
superfamilySSF103481Multidrug resistance 453 564 1.2e-08Not foundNot found
superfamilySSF103481Multidrug resistance 54 164 4.9e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-415NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3EA151e-155Q3EA15_ARATH Putative uncharacterized protein At4g15540.1 OS=Arabidopsis thaliana GN=At4g15540 PE=4 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18836(3 genes,3 taxa):Arabidopsis thalianaAT4G15540.1
ORTHOMCL18836(3 genes,3 taxa):Brassica oleraceaBol006759
ORTHOMCL18836(3 genes,3 taxa):Brassica rapaBra030338
Tandem Duplication
ClusterGene Num.Gene List
Cluster_7252Bol006758 Bol006759 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:28183621..29679603 (+)B.rapaA04:5538917..6265572 (-)49
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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