Basic Information
Gene Model:Bol006717
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000273
Sequence:
 | 
Gene Structure
Nucleotide Length:2651 bp
Transcript Length:2532 bp
Protein Length:843 aa
Strand:-
Location:C04: 29459844 : 29462494
Gene CDSs(2): 1-580 | 700-2651 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 740 752 NANot foundNot found
Segsegseg 3 14 NANot foundNot found
Segsegseg 140 144 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 618 630 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 503 525 NAIPR017441Protein kinase, ATP binding site
superfamilySSF56112Protein kinase-like 467 775 1.1e-79IPR011009Protein kinase-like domain
HMMPfamPF00069Pkinase 497 696 2.1e-39IPR017442Serine/threonine-protein kinase-like domain
HMMSmartSM00219no description 497 767 1.3e-32IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 497 770 1.8e-26IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 497 770 36.033IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 113 805 2.4e-220Not foundNot found
HMMPantherPTHR23258:SF418PTO-LIKE KINASE 113 805 2.4e-220Not foundNot found
Gene3DG3DSA:3.30.200.20no description 478 572 2.5e-22Not foundNot found
Gene3DG3DSA:1.10.510.10no description 575 778 6.5e-48Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9SJT00.0Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RH930.0B9RH93_RICCO Kinase, putative OS=Ricinus communis GN=RCOM_1448800 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389901e-143K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT1G30570.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G21480.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G23200.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G39360.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G04690.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G46290.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G51550.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT4G39110.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G24010.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G28680.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G38990.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39000.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39020.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39030.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G54380.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G59700.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G61350.1
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol001386
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol003351
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol004978
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol006717
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol010609
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014574
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014601
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014758
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol015031
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol016035
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol016633
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol017280
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol018534
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol020421
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol022464
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol027956
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol036282
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol036480
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol038854
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol040130
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol040131
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol041389
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol044718
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra000130
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra002541
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra002993
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra006873
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra009722
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra009888
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra010006
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra010704
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra011875
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra012850
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra018214
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra020618
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra025488
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028219
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028220
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028425
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra029027
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra030296
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra032171
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra032404
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra033598
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra033826
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra035934
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra036791
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra038906
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra039190
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000200001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000210001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000211001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000212001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01021662001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01025061001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01028870001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032879001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032883001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032888001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01034992001
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0155500-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0253000-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0769700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0769700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs03t0281500-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs03t0333200-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-03
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0280700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0280700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0317700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0317900-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0318700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0318700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs06t0126250-00
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs06t0334300-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs07t0147600-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs07t0147600-02
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s24080.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s41620.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s47120.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0004s07780.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0004s16610.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s05690.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13320.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13330.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13340.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18380.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18690.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18710.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18750.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18760.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0006s11050.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0008s10500.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0009s03170.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0009s12320.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s14990.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s15570.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s22010.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0011s12550.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0011s16860.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0013s03980.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0015s07280.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0016s14560.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s01660.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13130.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13150.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13170.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13190.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13240.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13270.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0096s00220.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0125s00210.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0221s00210.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0554s00200.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g007450.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g036260.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g039000.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb02g002840.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb03g005510.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb03g009660.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb06g028840.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb06g029710.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g001733.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g004680.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g009320.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb10g001580.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb10g025840.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.contig_32448.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.contig_36792.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_1.336
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_107.101
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_13.288
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_14.203
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_252.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_617.4
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_86.73
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_9.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:29217769..29679603 (+)A.thalianaChr2:9002032..9269019 (+)26
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:29245931..29679603 (+)B.rapaA09:4872322..5135897 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G2148092027539205368Chr2Subgenome_II21
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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