Basic Information
Gene Model:Bol006627
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000276
Sequence:
 | 
Gene Structure
Nucleotide Length:4419 bp
Transcript Length:2499 bp
Protein Length:832 aa
Strand:-
Location:Scaffold000276: 260908 : 265326
Gene CDSs(10): 1-410 | 500-772 | 846-1113 | 1477-1820 | 2353-2635 | 2717-2786 | 2891-2986 | 3235-3647 | 3944-4088 | 4223-4419 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 160 689 1.7e-61IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF52743Subtilisin-like 134 693 9.5e-69IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 221 235 NANot foundNot found
Segsegseg 299 315 NANot foundNot found
Segsegseg 641 650 NANot foundNot found
Segsegseg 76 83 NANot foundNot found
Segsegseg 16 29 NANot foundNot found
HMMPfamPF06280DUF1034 714 826 9.3e-26IPR010435Peptidase S8A, DUF1034 C-terminal
HMMPfamPF02225PA 405 522 1.2e-09IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 149 665 2.1e-21IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 80 136 1.2e-11IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 77 830 1e-237IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 77 830 1e-237Not foundNot found
PatternScanPS00138SUBTILASE_SER 614 624 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00137SUBTILASE_HIS 250 260 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 168 179 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0005618 Cellular Component cell wall
GO:0006508 Biological Process proteolysis
GO:0016020 Cellular Component membrane
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653513e-72SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q948Q40.0Q948Q4_ARATH Subtilisin-like serine protease OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11298(7 genes,6 taxa):Arabidopsis thalianaAT1G62340.1
ORTHOMCL11298(7 genes,6 taxa):Brassica oleraceaBol006627
ORTHOMCL11298(7 genes,6 taxa):Brassica rapaBra034497
ORTHOMCL11298(7 genes,6 taxa):Brassica rapaBra034498
ORTHOMCL11298(7 genes,6 taxa):Populus trichocarpaPOPTR_0011s01560.1
ORTHOMCL11298(7 genes,6 taxa):Sorghum bicolorSb06g003020.1
ORTHOMCL11298(7 genes,6 taxa):Carica papayaevm.TU.supercontig_152.52
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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