Basic Information
Gene Model:Bol006589
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000277
Sequence:
 | 
Gene Structure
Nucleotide Length:3884 bp
Transcript Length:1095 bp
Protein Length:364 aa
Strand:+
Location:C08: 39750960 : 39754843
Gene CDSs(7): 1-169 | 251-402 | 478-636 | 921-1173 | 1251-1367 | 1472-1534 | 3703-3884 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 43 158 1.2e-09Not foundNot found
superfamilySSF103481Multidrug resistance 221 332 2.8e-12Not foundNot found
HMMPfamPF00892DUF6 196 325 5.8e-20IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 18 151 6.1e-16IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1634e-535NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GXB41e-172Q8GXB4_ARATH Putative nodulin protein N21 OS=Arabidopsis thaliana GN=At1g09380/F14J9_4 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5564(10 genes,8 taxa):Arabidopsis thalianaAT1G09380.1
ORTHOMCL5564(10 genes,8 taxa):Brassica oleraceaBol006589
ORTHOMCL5564(10 genes,8 taxa):Brassica oleraceaBol036836
ORTHOMCL5564(10 genes,8 taxa):Brassica rapaBra020026
ORTHOMCL5564(10 genes,8 taxa):Brassica rapaBra031664
ORTHOMCL5564(10 genes,8 taxa):Vitis viniferaGSVIVT01031289001
ORTHOMCL5564(10 genes,8 taxa):Oryza sativaOs01t0297700-01
ORTHOMCL5564(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s00820.1
ORTHOMCL5564(10 genes,8 taxa):Sorghum bicolorSb03g012300.1
ORTHOMCL5564(10 genes,8 taxa):Carica papayaevm.TU.supercontig_48.195
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:36203949..39772111 (-)A.thalianaChr1:3009941..6730931 (+)399
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0938030261353029549Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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