Basic Information
Gene Model:Bol006574
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000277
Sequence:
 | 
Gene Structure
Nucleotide Length:2596 bp
Transcript Length:1575 bp
Protein Length:524 aa
Strand:-
Location:C08: 39835473 : 39838068
Gene CDSs(2): 1-810 | 1832-2596 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 479 488 NANot foundNot found
Segsegseg 243 250 NANot foundNot found
Segsegseg 384 409 NANot foundNot found
Segsegseg 200 214 NANot foundNot found
Segsegseg 65 84 NANot foundNot found
Segsegseg 14 43 NANot foundNot found
HMMPantherPTHR12266NA+/CA2+ K+ INDEPEND 184 520 2.9e-82Not foundNot found
HMMPfamPF01699Na_Ca_ex 376 516 2.7e-29IPR004837Sodium/calcium exchanger membrane region
HMMPfamPF01699Na_Ca_ex 82 213 5.9e-24IPR004837Sodium/calcium exchanger membrane region
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q6AXS04e-47NCKX6_RAT Sodium/potassium/calcium exchanger 6 OS=Rattus norvegicus GN=Slc24a6 PE=1 SV=1
TrEMBL
Best HitE_value Description
O040340.0O04034_ARATH F7G19.17 protein OS=Arabidopsis thaliana GN=At1g08960 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_03g0086002e-52K13754
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12509(6 genes,6 taxa):Arabidopsis thalianaAT1G08960.1
ORTHOMCL12509(6 genes,6 taxa):Brassica oleraceaBol006574
ORTHOMCL12509(6 genes,6 taxa):Brassica rapaBra031650
ORTHOMCL12509(6 genes,6 taxa):Vitis viniferaGSVIVT01000027001
ORTHOMCL12509(6 genes,6 taxa):Populus trichocarpaPOPTR_0013s02590.1
ORTHOMCL12509(6 genes,6 taxa):Carica papayaevm.TU.supercontig_48.27
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39797084..40235174 (-)A.thalianaChr1:2276270..2936586 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0896028796422882231Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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