Basic Information
Gene Model:Bol006573
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000277
Sequence:
 | 
Gene Structure
Nucleotide Length:3400 bp
Transcript Length:1494 bp
Protein Length:497 aa
Strand:-
Location:C08: 39840050 : 39843449
Gene CDSs(18): 1-228 | 340-402 | 507-596 | 687-746 | 939-1004 | 1104-1169 | 1282-1357 | 1441-1505 | 1647-1739 | 1827-1907 | 1997-2081 | 2192-2235 | 2334-2396 | 2492-2551 | 2648-2701 | 2846-2905 | 3067-3181 | 3276-3400 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00879SP: MFS transporter, 1 488 5.9e-79IPR003663Sugar/inositol transporter
ProfileScanPS50850MFS 62 481 39.792Not foundNot found
PatternScanPS00217SUGAR_TRANSPORT_2 158 183 NAIPR005829Sugar transporter, conserved site
HMMPantherPTHR11600:SF74SUGAR TRANSPORTER PL 2 356 1.1e-189Not foundNot found
HMMPantherPTHR11600SUGAR TRANSPORTER 2 356 1.1e-189Not foundNot found
superfamilySSF103473MFS general substrat 37 489 2e-66IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF00083Sugar_tr 93 492 2.4e-87IPR005828General substrate transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O040360.0ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3
TrEMBL
Best HitE_value Description
B1GXJ71e-174B1GXJ7_ARATH Hexose transporter-like protein OS=Arabidopsis thaliana GN=At1g08920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15944401e-106K08145SLC2A8, GLUT8MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7134(9 genes,3 taxa):Arabidopsis thalianaAT1G08930.1
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol006573
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol022158
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol035340
ORTHOMCL7134(9 genes,3 taxa):Brassica oleraceaBol041246
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra018591
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra027959
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra030748
ORTHOMCL7134(9 genes,3 taxa):Brassica rapaBra031649
Tandem Duplication
ClusterGene Num.Gene List
Cluster_9022Bol006572 Bol006573 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39797084..40235174 (-)A.thalianaChr1:2276270..2936586 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0893028734652877270Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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