Basic Information
Gene Model:Bol006535
Gene Family:Antiporter Super Family
Chromosome:C08
Scaffold:Scaffold000277
Sequence:
 | 
Gene Structure
Nucleotide Length:2883 bp
Transcript Length:2457 bp
Protein Length:818 aa
Strand:+
Location:C08: 40046861 : 40049743
Gene CDSs(4): 1-498 | 738-1400 | 1491-2507 | 2605-2883 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00999Na_H_Exchanger 208 458 1.5e-11IPR006153Cation/H+ exchanger
Segsegseg 587 598 NANot foundNot found
Segsegseg 544 558 NANot foundNot found
Segsegseg 127 140 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O229206e-71CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q67ZY00.0Q67ZY0_ARATH Putative uncharacterized protein At1g08140 OS=Arabidopsis thaliana GN=At1g08140 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08135.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08140.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT1G08150.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT2G28170.1
ORTHOMCL1083(19 genes,3 taxa):Arabidopsis thalianaAT2G28180.1
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006534
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006535
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol006536
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol026382
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol026384
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol033246
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol041186
ORTHOMCL1083(19 genes,3 taxa):Brassica oleraceaBol041187
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra018650
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra018651
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra031613
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra031614
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra034393
ORTHOMCL1083(19 genes,3 taxa):Brassica rapaBra035668
Tandem Duplication
ClusterGene Num.Gene List
Cluster_4263Bol006534 Bol006535 Bol006536 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39797084..40235174 (-)A.thalianaChr1:2276270..2936586 (+)64
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:39238707..40235174 (+)B.rapaA09:1347830..2092640 (-)116
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0814025520362555161Chr1Subgenome_I580
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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