Basic Information
Gene Model:Bol006484
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000278
Sequence:
 | 
Gene Structure
Nucleotide Length:1131 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:-
Location:Scaffold000278: 344205 : 345335
Gene CDSs(4): 1-365 | 428-533 | 629-919 | 1003-1131 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 1 289 1.1e-72IPR001932Protein phosphatase 2C-related
Segsegseg 142 153 NANot foundNot found
HMMSmartSM00332no description 2 282 6.8e-98IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 1 289 1.1e-136IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 1 289 1.1e-136Not foundNot found
Gene3DG3DSA:3.60.40.10no description 1 288 1.7e-71IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 1 277 1.9e-91IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 32 40 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
P495971e-154P2C56_ARATH Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9HDB41e-107B9HDB4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1081359 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G260801e-154K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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