Basic Information
Gene Model:Bol006453
Gene Family:ARIADNE Gene Families
Chromosome:Cun
Scaffold:Scaffold000279
Sequence:
 | 
Gene Structure
Nucleotide Length:2239 bp
Transcript Length:1722 bp
Protein Length:573 aa
Strand:-
Location:Scaffold000279: 582155 : 584393
Gene CDSs(3): 1-195 | 400-741 | 1055-2239 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50089ZF_RING_2 123 169 9.332IPR001841Zinc finger, RING-type
PatternScanPS00518ZF_RING_1 304 313 NAIPR017907Zinc finger, RING-type, conserved site
superfamilySSF57850RING/U-box 100 215 3.1e-11Not foundNot found
superfamilySSF57850RING/U-box 275 332 3.9e-17Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 83 516 2.2e-242Not foundNot found
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 83 516 2.2e-242Not foundNot found
Segsegseg 364 378 NANot foundNot found
HMMPfamPF01485IBR 193 256 1.5e-23IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 265 322 0.017IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 193 256 2.8e-22IPR002867Zinc finger, C6HC-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9SKC20.0ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9MY131e-167B9MY13_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_741450 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7414501e-167K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT1G05890.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31510.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31760.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31770.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31780.1
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004534
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004656
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006452
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006453
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol008223
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol009030
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol014128
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol023324
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol024724
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol041028
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol045042
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra005642
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra006112
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra015463
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021726
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021742
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022479
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022845
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022865
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra023338
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01003757001
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01010742001
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs04t0492100-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs08t0540300-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs09t0513800-01
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0007s02130.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0008s07680.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0010s18800.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s06050.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb06g021080.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb07g025570.1
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_71.10
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_99.46
Tandem Duplication
ClusterGene Num.Gene List
Cluster_16862Bol006452 Bol006453 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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