Basic Information
Gene Model:Bol006438
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000279
Sequence:
 | 
Gene Structure
Nucleotide Length:1926 bp
Transcript Length:1926 bp
Protein Length:641 aa
Strand:-
Location:Scaffold000279: 431841 : 433766
Gene CDSs(1): 1-1926 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23258SERINE-THREONINE PRO 91 543 3.5e-248Not foundNot found
HMMPantherPTHR23258:SF83RECEPTOR-LIKE PROTEI 91 543 3.5e-248Not foundNot found
HMMPfamPF00069Pkinase 347 565 8.8e-38IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 163 184 1.4IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 115 137 1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 139 161 0.00047IPR001611Leucine-rich repeat
ProfileScanPS50011PROTEIN_KINASE_DOM 347 641 39.142IPR000719Protein kinase, catalytic domain
HMMSmartSM00220no description 347 640 5.6e-37IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 347 636 1.8e-15IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 485 497 NAIPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:3.30.200.20no description 339 442 2.7e-11Not foundNot found
Gene3DG3DSA:1.10.510.10no description 441 639 1.4e-47Not foundNot found
Gene3DG3DSA:3.80.10.10no description 36 221 5.5e-30Not foundNot found
Segsegseg 338 352 NANot foundNot found
Segsegseg 246 283 NANot foundNot found
Segsegseg 288 308 NANot foundNot found
Segsegseg 13 36 NANot foundNot found
superfamilySSF52058L domain-like 66 231 1.2e-28Not foundNot found
superfamilySSF56112Protein kinase-like 317 636 7.9e-72IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9SGP29e-69HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SKB20.0Q9SKB2_ARATH Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G284401e-68K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2459(14 genes,8 taxa):Arabidopsis thalianaAT2G31880.1
ORTHOMCL2459(14 genes,8 taxa):Brassica oleraceaBol006438
ORTHOMCL2459(14 genes,8 taxa):Brassica oleraceaBol006439
ORTHOMCL2459(14 genes,8 taxa):Brassica oleraceaBol008219
ORTHOMCL2459(14 genes,8 taxa):Brassica rapaBra021758
ORTHOMCL2459(14 genes,8 taxa):Brassica rapaBra021759
ORTHOMCL2459(14 genes,8 taxa):Brassica rapaBra022870
ORTHOMCL2459(14 genes,8 taxa):Vitis viniferaGSVIVT01007593001
ORTHOMCL2459(14 genes,8 taxa):Oryza sativaOs06t0288100-01
ORTHOMCL2459(14 genes,8 taxa):Populus trichocarpaPOPTR_0012s09230.1
ORTHOMCL2459(14 genes,8 taxa):Populus trichocarpaPOPTR_0015s09830.1
ORTHOMCL2459(14 genes,8 taxa):Populus trichocarpaPOPTR_0015s09830.2
ORTHOMCL2459(14 genes,8 taxa):Sorghum bicolorSb10g010660.1
ORTHOMCL2459(14 genes,8 taxa):Carica papayaevm.TU.supercontig_4.24
Tandem Duplication
ClusterGene Num.Gene List
Cluster_8452Bol006438 Bol006439 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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