Basic Information
Gene Model:Bol006393
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000279
Sequence:
 | 
Gene Structure
Nucleotide Length:23223 bp
Transcript Length:2052 bp
Protein Length:683 aa
Strand:-
Location:Scaffold000279: 32063 : 55285
Gene CDSs(8): 1-567 | 772-1122 | 1204-1385 | 7724-7859 | 7989-8206 | 17555-17570 | 21460-21778 | 22961-23223 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 27 38 NANot foundNot found
Segsegseg 669 679 NANot foundNot found
PatternScanPS00308LECTIN_LEGUME_ALPHA 514 523 NAIPR000985Legume lectin, alpha chain, conserved site
HMMPfamPF03552Cellulose_synt 205 300 5.8e-15IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 358 487 3.7e-31IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 10 179 2e-40IPR005150Cellulose synthase
Gene Ontology
GO TermGO TypeDescription
GO:0005529 Molecular Function sugar binding
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q8RX830.0CSLB3_ARATH Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IAH31e-145B9IAH3_POPTR Putative uncharacterized protein PtrCSLB1 OS=Populus trichocarpa GN=PtrCSLB1 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:5421393e-76K10999CESAcellulose synthase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT2G32530.1
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT2G32540.1
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT2G32610.1
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT2G32620.1
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT4G15290.1
ORTHOMCL496(27 genes,8 taxa):Arabidopsis thalianaAT4G15320.1
ORTHOMCL496(27 genes,8 taxa):Brassica oleraceaBol006393
ORTHOMCL496(27 genes,8 taxa):Brassica rapaBra021796
ORTHOMCL496(27 genes,8 taxa):Brassica rapaBra021797
ORTHOMCL496(27 genes,8 taxa):Brassica rapaBra034890
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030456001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030458001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030461001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030462001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030464001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030467001
ORTHOMCL496(27 genes,8 taxa):Vitis viniferaGSVIVT01030468001
ORTHOMCL496(27 genes,8 taxa):Oryza sativaOs04t0429500-00
ORTHOMCL496(27 genes,8 taxa):Oryza sativaOs10t0341700-01
ORTHOMCL496(27 genes,8 taxa):Oryza sativaOs10t0341700-02
ORTHOMCL496(27 genes,8 taxa):Oryza sativaOs10t0341700-03
ORTHOMCL496(27 genes,8 taxa):Populus trichocarpaPOPTR_0002s21420.1
ORTHOMCL496(27 genes,8 taxa):Populus trichocarpaPOPTR_2114s00200.1
ORTHOMCL496(27 genes,8 taxa):Sorghum bicolorSb06g016750.1
ORTHOMCL496(27 genes,8 taxa):Sorghum bicolorSb06g016760.1
ORTHOMCL496(27 genes,8 taxa):Sorghum bicolorSb06g016770.1
ORTHOMCL496(27 genes,8 taxa):Carica papayaevm.TU.supercontig_10.92
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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