Basic Information
Gene Model:Bol006370
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000280
Sequence:
 | 
Gene Structure
Nucleotide Length:3373 bp
Transcript Length:2577 bp
Protein Length:858 aa
Strand:+
Location:C07: 27310921 : 27314293
Gene CDSs(10): 1-419 | 498-779 | 873-1143 | 1233-1564 | 1641-1923 | 2012-2084 | 2159-2254 | 2341-2744 | 2851-3007 | 3114-3373 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 83 856 1.1e-257IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 83 856 1.1e-257Not foundNot found
PatternScanPS00138SUBTILASE_SER 634 644 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 191 202 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 182 712 7.7e-68IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
superfamilySSF52743Subtilisin-like 143 718 4.5e-73IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 747 755 NANot foundNot found
Segsegseg 657 671 NANot foundNot found
Segsegseg 321 338 NANot foundNot found
Segsegseg 86 99 NANot foundNot found
Segsegseg 27 40 NANot foundNot found
HMMPfamPF00082Peptidase_S8 164 703 1.3e-31IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF02225PA 426 541 2.6e-15IPR003137Protease-associated PA
HMMPfamPF05922Inhibitor_I9 42 161 4.7e-14IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653513e-84SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FI120.0Q9FI12_ARATH Serine proteinase OS=Arabidopsis thaliana GN=At5g44530 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT1G30600.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT2G19170.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G20430.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G30020.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT5G44530.1
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol006370
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol014603
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol020964
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol022689
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol028350
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol029805
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol033631
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra011160
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra013464
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra024112
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra032407
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra033749
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra036728
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra038844
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01004808001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01010871001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01037948001
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs01t0769200-01
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs06t0700000-01
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s15120.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s43080.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0006s07580.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0011s15890.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.2
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb03g035770.1
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb10g028870.1
ORTHOMCL322(33 genes,8 taxa):Carica papayaevm.TU.supercontig_95.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:26942510..27629254 (+)A.thalianaChr5:17864520..18118608 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:26942510..27723382 (+)B.rapaA06:22839581..23101718 (+)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
VAT5G445301793768917941292Chr5Subgenome_III(LF)131
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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