Basic Information
Gene Model:Bol006136
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000285
Sequence:
 | 
Gene Structure
Nucleotide Length:1186 bp
Transcript Length:558 bp
Protein Length:185 aa
Strand:-
Location:Scaffold000285: 230291 : 231476
Gene CDSs(5): 1-119 | 210-359 | 671-763 | 892-1002 | 1102-1186 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01090apt: adenine phospho 15 182 4.5e-83IPR005764Adenine phosphoribosyl transferase
HMMPfamPF00156Pribosyltran 36 160 5.8e-42IPR000836Phosphoribosyltransferase
HAMAPMF_00004APT_MF_00004 13 182 32.534IPR005764Adenine phosphoribosyl transferase
Gene3DG3DSA:3.40.50.2020no description 6 179 9.9e-59Not foundNot found
superfamilySSF53271PRTase-like 6 179 1.2e-58Not foundNot found
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 123 159 0.00022Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 123 159 0.00022Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P311667e-90APT1_ARATH Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q7XJC21e-92Q7XJC2_BRANA Adenine phosphoribosyltransferase (Fragment) OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G274501e-89K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23739(2 genes,2 taxa):Brassica oleraceaBol006136
ORTHOMCL23739(2 genes,2 taxa):Brassica rapaBra032829
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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