Basic Information
Gene Model:Bol006077
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000286
Sequence:
 | 
Gene Structure
Nucleotide Length:1783 bp
Transcript Length:1179 bp
Protein Length:392 aa
Strand:+
Location:C09: 1236968 : 1238750
Gene CDSs(7): 1-342 | 444-525 | 737-923 | 987-1062 | 1145-1270 | 1340-1683 | 1762-1783 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 200 241 1.8e-06Not foundNot found
HMMPantherPTHR22952:SF9CAMP-RESPONSE ELEMEN 200 241 1.8e-06Not foundNot found
HMMSmartSM00338no description 196 260 9.8e-19IPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 198 252 10.944IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene3DG3DSA:1.20.5.170no description 200 254 0.00046Not foundNot found
Coilcoilcoiled-coil 258 286 NANot foundNot found
Coilcoilcoiled-coil 230 251 NANot foundNot found
Segsegseg 172 185 NANot foundNot found
Segsegseg 207 218 NANot foundNot found
Segsegseg 297 301 NANot foundNot found
Segsegseg 52 68 NANot foundNot found
PatternScanPS00036BZIP_BASIC 203 218 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 196 259 2.1e-13IPR011616bZIP transcription factor, bZIP-1
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q990905e-40CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9FUD41e-154Q9FUD4_ARATH BZIP protein BZO2H1 OS=Arabidopsis thaliana GN=At4g02640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5518493e-08K14432ABFABA responsive element binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18756(3 genes,3 taxa):Arabidopsis thalianaAT4G02640.2
ORTHOMCL18756(3 genes,3 taxa):Brassica oleraceaBol006077
ORTHOMCL18756(3 genes,3 taxa):Brassica rapaBra036251
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:500941..1722070 (+)A.thalianaChr4:570242..1610037 (+)122
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:680349..1420517 (+)B.rapaA10:13349311..13777991 (+)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0264011539971156320Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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