Basic Information
Gene Model:Bol006011
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000287
Sequence:
 | 
Gene Structure
Nucleotide Length:1476 bp
Transcript Length:1476 bp
Protein Length:491 aa
Strand:-
Location:C06: 9875605 : 9877080
Gene CDSs(1): 1-1476 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 93 407 43.721IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 146 427 3.9e-53Not foundNot found
Coilcoilcoiled-coil 366 387 NANot foundNot found
Segsegseg 280 291 NANot foundNot found
Segsegseg 247 273 NANot foundNot found
Segsegseg 87 99 NANot foundNot found
Segsegseg 48 63 NANot foundNot found
Segsegseg 13 42 NANot foundNot found
HMMPantherPTHR22985SERINE/THREONINE PRO 66 423 1.7e-164Not foundNot found
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 66 423 1.7e-164Not foundNot found
HMMSmartSM00219no description 93 401 1e-09IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 93 407 2.5e-80IPR002290Serine/threonine-protein kinase domain
PatternScanPS00108PROTEIN_KINASE_ST 215 227 NAIPR008271Serine/threonine-protein kinase, active site
superfamilySSF56112Protein kinase-like 68 434 9.5e-79IPR011009Protein kinase-like domain
HMMPfamPF00069Pkinase 93 407 3.9e-61IPR017442Serine/threonine-protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
A2YBX55e-93G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9C8M50.0Q9C8M5_ARATH Auxin-induced protein kinase, putative; 23581-22151 OS=Arabidopsis thaliana GN=At1g53700 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G477501e-88K08286E2.7.11.-protein-serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5770(10 genes,8 taxa):Arabidopsis thalianaAT1G53700.1
ORTHOMCL5770(10 genes,8 taxa):Brassica oleraceaBol005086
ORTHOMCL5770(10 genes,8 taxa):Brassica oleraceaBol006011
ORTHOMCL5770(10 genes,8 taxa):Brassica rapaBra027344
ORTHOMCL5770(10 genes,8 taxa):Brassica rapaBra041025
ORTHOMCL5770(10 genes,8 taxa):Vitis viniferaGSVIVT01020511001
ORTHOMCL5770(10 genes,8 taxa):Oryza sativaOs03t0253200-01
ORTHOMCL5770(10 genes,8 taxa):Populus trichocarpaPOPTR_0011s14320.1
ORTHOMCL5770(10 genes,8 taxa):Sorghum bicolorSb01g040890.1
ORTHOMCL5770(10 genes,8 taxa):Carica papayaevm.TU.supercontig_229.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:9752149..10756149 (+)A.thalianaChr3:4764149..5189697 (+)23
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:9661697..10953577 (+)B.rapaA08:18839420..19427861 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G537002004858620050115Chr1Subgenome_II75
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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