Basic Information
Gene Model:Bol005977
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000288
Sequence:
 | 
Gene Structure
Nucleotide Length:1340 bp
Transcript Length:1128 bp
Protein Length:375 aa
Strand:+
Location:Scaffold000288: 391948 : 393287
Gene CDSs(3): 1-466 | 584-891 | 987-1340 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11785:SF78GLUTAMATE/GAMMA-AMIN 1 375 6e-126Not foundNot found
HMMPantherPTHR11785AMINO ACID TRANSPORT 1 375 6e-126IPR002293Amino acid/polyamine transporter I
HMMPIRPIRSF006060Amino acid transport 1 374 2e-08IPR002293Amino acid/polyamine transporter I
HMMPfamPF00324AA_permease 26 80 0.00034IPR004841Amino acid permease-associated region
Segsegseg 303 338 NANot foundNot found
Segsegseg 247 258 NANot foundNot found
Segsegseg 119 129 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0006865 Biological Process amino acid transport
GO:0015171 Molecular Function amino acid transmembrane transporter activity
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9C6S41e-166Q9C6S4_ARATH Amino acid permease, putative OS=Arabidopsis thaliana GN=F5M6.17 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
lma:LmjF35.44102e-16K01552E3.6.3.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_5462Bol005976 Bol005977 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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