Basic Information
Gene Model:Bol005965
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000288
Sequence:
 | 
Gene Structure
Nucleotide Length:1014 bp
Transcript Length:1014 bp
Protein Length:337 aa
Strand:-
Location:Scaffold000288: 134331 : 135344
Gene CDSs(1): 1-1014 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03754DUF313 174 294 3.6e-50IPR005508Protein of unknown function DUF313
Segsegseg 33 48 NANot foundNot found
Segsegseg 125 141 NANot foundNot found
ProfileScanPS50863B3 216 322 8.952IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6X01e-77Y1203_ARATH B3 domain-containing protein At1g32030 OS=Arabidopsis thaliana GN=At1g32030 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9SJ988e-18Q9SJ98_ARATH Putative uncharacterized protein At2g24670 OS=Arabidopsis thaliana GN=At2g24670 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17543(3 genes,3 taxa):Arabidopsis thalianaAT1G32030.1
ORTHOMCL17543(3 genes,3 taxa):Brassica oleraceaBol005965
ORTHOMCL17543(3 genes,3 taxa):Brassica rapaBra023229
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo