Basic Information
Gene Model:Bol005899
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000290
Sequence:
 | 
Gene Structure
Nucleotide Length:1566 bp
Transcript Length:927 bp
Protein Length:308 aa
Strand:+
Location:C05: 31542574 : 31544139
Gene CDSs(4): 1-147 | 269-497 | 603-706 | 1120-1566 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03151TPT 158 302 1.3e-50IPR004853Protein of unknown function DUF250
superfamilySSF103481Multidrug resistance 48 152 9.7e-05Not foundNot found
superfamilySSF103481Multidrug resistance 195 308 2.2e-06Not foundNot found
Segsegseg 133 145 NANot foundNot found
HMMPantherPTHR11132SOLUTE CARRIER FAMIL 8 308 1e-92Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6ICL75e-22S35E4_HUMAN Solute carrier family 35 member E4 OS=Homo sapiens GN=SLC35E4 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5XF091e-172Q5XF09_ARATH At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pon:1004475056e-12K08818CDC2Lcell division cycle 2-like
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6158(10 genes,8 taxa):Arabidopsis thalianaAT3G11320.1
ORTHOMCL6158(10 genes,8 taxa):Brassica oleraceaBol005899
ORTHOMCL6158(10 genes,8 taxa):Brassica rapaBra034851
ORTHOMCL6158(10 genes,8 taxa):Vitis viniferaGSVIVT01034023001
ORTHOMCL6158(10 genes,8 taxa):Oryza sativaOs03t0286300-01
ORTHOMCL6158(10 genes,8 taxa):Oryza sativaOs03t0286300-02
ORTHOMCL6158(10 genes,8 taxa):Populus trichocarpaPOPTR_0008s06380.1
ORTHOMCL6158(10 genes,8 taxa):Populus trichocarpaPOPTR_0010s20130.1
ORTHOMCL6158(10 genes,8 taxa):Sorghum bicolorSb02g044050.1
ORTHOMCL6158(10 genes,8 taxa):Carica papayaevm.TU.supercontig_19.226
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31446231..31936795 (-)A.thalianaChr5:1239100..1843000 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31463180..31882408 (+)B.rapaA10:2316765..2683954 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1132035466463548856Chr3Subgenome_III(LF)141
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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