Basic Information
Gene Model:Bol005881
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000290
Sequence:
 | 
Gene Structure
Nucleotide Length:915 bp
Transcript Length:915 bp
Protein Length:304 aa
Strand:-
Location:C05: 31672788 : 31673702
Gene CDSs(1): 1-915 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 79 130 1.6e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 79 140 1.7e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 79 140 1.1e-22IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 80 143 5.7e-37IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 15 24 NANot foundNot found
Segsegseg 61 73 NANot foundNot found
Segsegseg 113 128 NANot foundNot found
ProfileScanPS51032AP2_ERF 80 137 22.234IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O821332e-80DRE2B_ARATH Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=2 SV=1
TrEMBL
Best HitE_value Description
B3SQD51e-91B3SQD5_THEHA DREB2B OS=Thellungiella halophila PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G110202e-80K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL23713(2 genes,2 taxa):Brassica oleraceaBol005881
ORTHOMCL23713(2 genes,2 taxa):Brassica rapaBra029889
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31446231..31936795 (-)A.thalianaChr5:1239100..1843000 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31463180..31882408 (+)B.rapaA10:2316765..2683954 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1102034553553457214Chr3Subgenome_III(LF)141
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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