Basic Information
Gene Model:Bol005874
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C05
Scaffold:Scaffold000290
Sequence:
 | 
Gene Structure
Nucleotide Length:1352 bp
Transcript Length:861 bp
Protein Length:286 aa
Strand:+
Location:C05: 31759796 : 31761147
Gene CDSs(4): 1-204 | 288-458 | 541-746 | 1073-1352 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 173 232 11.518IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 96 238 17.234IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 175 233 2.1e-07IPR000340Dual specificity phosphatase, catalytic domain
HMMPantherPTHR10159DUAL SPECIFICITY PRO 94 233 5.4e-10Not foundNot found
HMMSmartSM00195no description 96 246 0.00043IPR020422Dual specificity phosphatase, subgroup, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 94 233 1.1e-25Not foundNot found
Gene3DG3DSA:3.90.190.10no description 69 241 1.7e-27Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q1M1991e-09EPM2A_CANFA Laforin OS=Canis familiaris GN=EPM2A PE=3 SV=1
TrEMBL
Best HitE_value Description
Q9SRK51e-145Q9SRK5_ARATH Putative uncharacterized protein F9F8.24 OS=Arabidopsis thaliana GN=At3g10940 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cme:CMT465C2e-17K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9786(8 genes,8 taxa):Arabidopsis thalianaAT3G10940.1
ORTHOMCL9786(8 genes,8 taxa):Brassica oleraceaBol005874
ORTHOMCL9786(8 genes,8 taxa):Brassica rapaBra029881
ORTHOMCL9786(8 genes,8 taxa):Vitis viniferaGSVIVT01032705001
ORTHOMCL9786(8 genes,8 taxa):Oryza sativaOs11t0113100-01
ORTHOMCL9786(8 genes,8 taxa):Populus trichocarpaPOPTR_0019s07510.1
ORTHOMCL9786(8 genes,8 taxa):Sorghum bicolorSb08g002770.1
ORTHOMCL9786(8 genes,8 taxa):Carica papayaevm.TU.supercontig_19.87
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31446231..31936795 (-)A.thalianaChr5:1239100..1843000 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31463180..31882408 (+)B.rapaA10:2316765..2683954 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1094034220783423445Chr3Subgenome_III(LF)141
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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