Basic Information
Gene Model:Bol005856
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000290
Sequence:
 | 
Gene Structure
Nucleotide Length:1821 bp
Transcript Length:1008 bp
Protein Length:335 aa
Strand:+
Location:C05: 31861373 : 31863193
Gene CDSs(6): 1-84 | 236-412 | 785-907 | 1005-1226 | 1307-1357 | 1471-1821 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19222ATP BINDING CASSETE 89 327 7.2e-111Not foundNot found
HMMPantherPTHR19222:SF6ABC TRANSPORTER 89 327 7.2e-111IPR010230ATPase SufC, SUF system FeS cluster assembly
HMMTigrTIGR01978sufC: FeS assembly A 89 333 1.5e-131IPR010230ATPase SufC, SUF system FeS cluster assembly
superfamilySSF53795PEP carboxykinase-li 103 333 3.4e-40Not foundNot found
PatternScanPS00211ABC_TRANSPORTER_1 235 249 NAIPR017871ABC transporter, conserved site
HMMSmartSM00382no description 115 312 0.00021IPR003593ATPase, AAA+ type, core
Segsegseg 65 79 NANot foundNot found
Segsegseg 17 26 NANot foundNot found
Gene3DG3DSA:3.40.50.300no description 82 320 1.2e-32Not foundNot found
HMMPfamPF00005ABC_tran 116 311 1.6e-30IPR003439ABC transporter-like
ProfileScanPS50893ABC_TRANSPORTER_2 89 335 14.593IPR003439ABC transporter-like
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0006810 Biological Process transport
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q9CAF51e-170AB6I_ARATH ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9HKI21e-124B9HKI2_POPTR White-brown-complex ABC transporter family OS=Populus trichocarpa GN=POPTRDRAFT_563506 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G106701e-170K09013sufCFe-S cluster assembly ATP-binding protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9782(8 genes,7 taxa):Arabidopsis thalianaAT3G10670.1
ORTHOMCL9782(8 genes,7 taxa):Brassica oleraceaBol005856
ORTHOMCL9782(8 genes,7 taxa):Brassica oleraceaBol010958
ORTHOMCL9782(8 genes,7 taxa):Vitis viniferaGSVIVT01036588001
ORTHOMCL9782(8 genes,7 taxa):Oryza sativaOs03t0332700-01
ORTHOMCL9782(8 genes,7 taxa):Populus trichocarpaPOPTR_0008s01320.1
ORTHOMCL9782(8 genes,7 taxa):Sorghum bicolorSb01g036300.2
ORTHOMCL9782(8 genes,7 taxa):Carica papayaevm.TU.supercontig_33.99
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31446231..31936795 (-)A.thalianaChr5:1239100..1843000 (+)35
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:31463180..31882408 (+)B.rapaA10:2316765..2683954 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1067033350493337387Chr3Subgenome_III(LF)141
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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