Basic Information
Gene Model:Bol005820
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000291
Sequence:
 | 
Gene Structure
Nucleotide Length:1243 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:-
Location:Scaffold000291: 227842 : 229084
Gene CDSs(5): 1-267 | 338-500 | 577-654 | 745-810 | 1131-1243 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 57 136 4.8e-12IPR011598Helix-loop-helix DNA-binding
PatternScanPS00131CARBOXYPEPT_SER_SER 61 68 NAIPR018202Peptidase S10, serine carboxypeptidase, active site
Coilcoilcoiled-coil 108 171 NANot foundNot found
ProfileScanPS50888HLH 59 119 9.413IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 73 124 2e-06IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 63 149 0.0001IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 68 119 7e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPantherPTHR23042CIRCADIAN PROTEIN CL 75 113 4.3e-05Not foundNot found
HMMPantherPTHR23042:SF4NEURONAL PAS DOMAIN 75 113 4.3e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004185 Molecular Function serine-type carboxypeptidase activity
GO:0005634 Cellular Component nucleus
GO:0006508 Biological Process proteolysis
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C6821e-113BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1
TrEMBL
Best HitE_value Description
B7FHX66e-74B7FHX6_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17621(3 genes,3 taxa):Arabidopsis thalianaAT1G51070.1
ORTHOMCL17621(3 genes,3 taxa):Brassica oleraceaBol005820
ORTHOMCL17621(3 genes,3 taxa):Brassica rapaBra030459
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo