Basic Information
Gene Model:Bol005819
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000291
Sequence:
 | 
Gene Structure
Nucleotide Length:1047 bp
Transcript Length:1047 bp
Protein Length:348 aa
Strand:-
Location:Scaffold000291: 223405 : 224451
Gene CDSs(1): 1-1047 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54171DNA-binding domain 39 100 9.5e-16IPR016177DNA-binding, integrase-type
Segsegseg 206 222 NANot foundNot found
Segsegseg 324 339 NANot foundNot found
Segsegseg 70 82 NANot foundNot found
ProfileScanPS51032AP2_ERF 40 97 17.161IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS50863B3 171 284 11.970IPR003340Transcriptional factor B3
HMMSmartSM00380no description 40 103 7.3e-15IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:2.40.330.10no description 158 297 2.3e-28Not foundNot found
Gene3DG3DSA:3.30.730.10no description 39 100 1.6e-11IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF02362B3 170 267 8.2e-29IPR003340Transcriptional factor B3
HMMPfamPF00847AP2 39 88 3.2e-10IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C6881e-145RAVL3_ARATH AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GYV23e-83B9GYV2_POPTR AP2 domain-containing transcription factor OS=Populus trichocarpa GN=RAV3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G511201e-145K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12611(6 genes,3 taxa):Arabidopsis thalianaAT1G50680.1
ORTHOMCL12611(6 genes,3 taxa):Arabidopsis thalianaAT1G51120.1
ORTHOMCL12611(6 genes,3 taxa):Brassica oleraceaBol000985
ORTHOMCL12611(6 genes,3 taxa):Brassica oleraceaBol005819
ORTHOMCL12611(6 genes,3 taxa):Brassica rapaBra014282
ORTHOMCL12611(6 genes,3 taxa):Brassica rapaBra030458
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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