Basic Information
Gene Model:Bol005818
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000291
Sequence:
 | 
Gene Structure
Nucleotide Length:2080 bp
Transcript Length:1248 bp
Protein Length:415 aa
Strand:+
Location:Scaffold000291: 221011 : 223090
Gene CDSs(7): 1-292 | 380-460 | 575-821 | 923-1013 | 1368-1584 | 1669-1760 | 1853-2080 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 4 10 NANot foundNot found
HMMPfamPF08743Nse4 69 356 6.2e-09IPR014854Nse4
HMMPantherPTHR16140UNCHARACTERIZED 23 365 2.5e-75IPR014854Nse4
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6BDR86e-11NSE4_SCHPO Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe GN=nse4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9C6891e-164Q9C689_ARATH Putative uncharacterized protein F23H24.4 OS=Arabidopsis thaliana GN=At1g51130 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2888(13 genes,8 taxa):Arabidopsis thalianaAT1G51130.1
ORTHOMCL2888(13 genes,8 taxa):Brassica oleraceaBol005818
ORTHOMCL2888(13 genes,8 taxa):Brassica oleraceaBol019542
ORTHOMCL2888(13 genes,8 taxa):Brassica rapaBra018895
ORTHOMCL2888(13 genes,8 taxa):Brassica rapaBra030454
ORTHOMCL2888(13 genes,8 taxa):Vitis viniferaGSVIVT01033510001
ORTHOMCL2888(13 genes,8 taxa):Oryza sativaOs06t0618000-01
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0003s21830.1
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0016s04610.1
ORTHOMCL2888(13 genes,8 taxa):Populus trichocarpaPOPTR_0016s04710.1
ORTHOMCL2888(13 genes,8 taxa):Sorghum bicolorSb04g006460.1
ORTHOMCL2888(13 genes,8 taxa):Sorghum bicolorSb10g024320.1
ORTHOMCL2888(13 genes,8 taxa):Carica papayaevm.TU.supercontig_85.74
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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