Basic Information
Gene Model:Bol005722
Gene Family:U-box Gene Family
Chromosome:C08
Scaffold:Scaffold000294
Sequence:
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Gene Structure
Nucleotide Length:1332 bp
Transcript Length:1332 bp
Protein Length:443 aa
Strand:+
Location:C08: 82316 : 83647
Gene CDSs(1): 1-1332 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00504no description 62 125 2.6e-30IPR003613U box domain
Gene3DG3DSA:3.30.40.10no description 55 132 2.6e-23Not foundNot found
Gene3DG3DSA:1.25.10.10no description 210 442 8.4e-12IPR011989Armadillo-like helical
Segsegseg 25 34 NANot foundNot found
HMMPantherPTHR22849WDSAM1 PROTEIN 58 140 3.6e-11Not foundNot found
superfamilySSF57850RING/U-box 42 126 6.4e-12Not foundNot found
superfamilySSF48371ARM repeat 99 423 1.1e-33IPR016024Armadillo-type fold
HMMPfamPF04564U-box 58 132 5.7e-19IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9FHN90.0PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7QZC71e-173A7QZC7_VITVI Chromosome chr7 scaffold_270, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010592001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2097(15 genes,8 taxa):Arabidopsis thalianaAT3G49810.1
ORTHOMCL2097(15 genes,8 taxa):Arabidopsis thalianaAT5G65920.1
ORTHOMCL2097(15 genes,8 taxa):Brassica oleraceaBol005722
ORTHOMCL2097(15 genes,8 taxa):Brassica oleraceaBol021972
ORTHOMCL2097(15 genes,8 taxa):Brassica rapaBra029975
ORTHOMCL2097(15 genes,8 taxa):Brassica rapaBra037833
ORTHOMCL2097(15 genes,8 taxa):Vitis viniferaGSVIVT01007048001
ORTHOMCL2097(15 genes,8 taxa):Oryza sativaOs03t0232600-01
ORTHOMCL2097(15 genes,8 taxa):Populus trichocarpaPOPTR_0002s11710.1
ORTHOMCL2097(15 genes,8 taxa):Populus trichocarpaPOPTR_0002s11730.1
ORTHOMCL2097(15 genes,8 taxa):Populus trichocarpaPOPTR_0006s29240.1
ORTHOMCL2097(15 genes,8 taxa):Populus trichocarpaPOPTR_0014s01460.1
ORTHOMCL2097(15 genes,8 taxa):Sorghum bicolorSb01g042180.1
ORTHOMCL2097(15 genes,8 taxa):Carica papayaevm.TU.contig_26343.6
ORTHOMCL2097(15 genes,8 taxa):Carica papayaevm.TU.supercontig_142.52
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:11789..153211 (-)A.thalianaChr3:18417568..18515475 (+)12
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:11789..451529 (+)B.rapaA09:9287101..9483066 (-)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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