Basic Information
Gene Model:Bol005718
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000294
Sequence:
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Gene Structure
Nucleotide Length:1161 bp
Transcript Length:840 bp
Protein Length:279 aa
Strand:-
Location:C08: 73187 : 74347
Gene CDSs(5): 1-354 | 437-520 | 583-667 | 761-927 | 1012-1161 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00526no description 101 166 9e-13IPR005818Histone H1/H5
HMMSmartSM00717no description 4 59 1.1e-06IPR001005SANT, DNA-binding
Gene3DG3DSA:1.10.10.60no description 1 68 6.1e-14IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.10no description 98 182 7.7e-07IPR011991Winged helix repressor DNA-binding
Segsegseg 65 82 NANot foundNot found
Segsegseg 221 269 NANot foundNot found
HMMPantherPTHR21717TELOMERIC REPEAT BIN 5 61 2.9e-06Not foundNot found
HMMPantherPTHR21717:SF9TELOMERIC REPEAT BIN 5 61 2.9e-06Not foundNot found
ProfileScanPS51294HTH_MYB 1 61 14.388IPR017930Myb-type HTH DNA-binding domain
superfamilySSF46689Homeodomain-like 1 68 1.3e-08IPR009057Homeodomain-like
superfamilySSF46785"Winged helix" DNA-b 99 184 4.5e-17Not foundNot found
Coilcoilcoiled-coil 225 263 NANot foundNot found
HMMPfamPF00538Linker_histone 100 171 0.00031IPR005818Histone H1/H5
HMMPfamPF00249Myb_DNA-binding 5 57 6.3e-07IPR014778Myb, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9FJW51e-102Q9FJW5_ARATH Similarity to MYB-like DNA-binding protein OS=Arabidopsis thaliana GN=TRB2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G498505e-74K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19767(3 genes,2 taxa):Brassica oleraceaBol005718
ORTHOMCL19767(3 genes,2 taxa):Brassica rapaBra037839
ORTHOMCL19767(3 genes,2 taxa):Brassica rapaBra037840
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:11789..153211 (-)A.thalianaChr3:18417568..18515475 (+)12
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:11789..451529 (+)B.rapaA09:9287101..9483066 (-)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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