Basic Information
Gene Model:Bol005693
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:Cun
Scaffold:Scaffold000295
Sequence:
 | 
Gene Structure
Nucleotide Length:3389 bp
Transcript Length:2004 bp
Protein Length:667 aa
Strand:-
Location:Scaffold000295: 519741 : 523129
Gene CDSs(15): 1-123 | 218-529 | 640-738 | 812-919 | 1024-1164 | 1268-1430 | 1575-1624 | 1731-1850 | 2003-2224 | 2311-2445 | 2521-2583 | 2670-2753 | 2841-2992 | 3069-3198 | 3288-3389 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF50249Nucleic acid-binding 544 661 1.8e-28IPR016027Nucleic acid-binding, OB-fold-like
superfamilySSF52799(Phosphotyrosine pro 74 270 5.2e-47Not foundNot found
superfamilySSF56091DNA ligase/mRNA capp 304 543 1.8e-54Not foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 172 242 12.330IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
PatternScanPS00383TYR_PHOSPHATASE_1 194 204 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPIRPIRSF036958mRNA capping enzyme, 1 667 0IPR017074mRNA capping enzyme, bifunctional
HMMPantherPTHR10367MRNA CAPPING ENZYME 70 661 1.3e-209Not foundNot found
Segsegseg 280 289 NANot foundNot found
Segsegseg 24 44 NANot foundNot found
HMMSmartSM00195no description 114 250 0.0035IPR020422Dual specificity phosphatase, subgroup, catalytic domain
Gene3DG3DSA:3.90.190.10no description 70 282 3.8e-59Not foundNot found
Gene3DG3DSA:2.40.50.140no description 592 634 5.1e-07IPR012340Nucleic acid-binding, OB-fold
HMMPfamPF03919mRNA_cap_C 544 643 1.3e-49IPR013846mRNA capping enzyme, C-terminal
HMMPfamPF01331mRNA_cap_enzyme 347 541 1.3e-149IPR001339mRNA capping enzyme
HMMPfamPF00782DSPc 128 232 8.1e-08IPR000340Dual specificity phosphatase, catalytic domain
Gene Ontology
GO TermGO TypeDescription
GO:0004484 Molecular Function mRNA guanylyltransferase activity
GO:0004651 Molecular Function polynucleotide 5'-phosphatase activity
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0005634 Cellular Component nucleus
GO:0006370 Biological Process mRNA capping
GO:0006397 Biological Process mRNA processing
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
O552369e-75MCE1_MOUSE mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8GSD70.0Q8GSD7_ARATH mRNA capping enzyme-like protein OS=Arabidopsis thaliana GN=At5g01290 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G012900.0K13917RNGTT--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT3G09100.2
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G01290.1
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G28210.1
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol005693
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol011288
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol016647
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra005691
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra009992
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra029747
ORTHOMCL2075(15 genes,8 taxa):Vitis viniferaGSVIVT01034015001
ORTHOMCL2075(15 genes,8 taxa):Oryza sativaOs12t0193200-01
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0006s09720.1
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0016s11810.1
ORTHOMCL2075(15 genes,8 taxa):Sorghum bicolorSb05g008670.1
ORTHOMCL2075(15 genes,8 taxa):Carica papayaevm.TU.supercontig_56.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo