Basic Information
Gene Model:Bol005654
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000295
Sequence:
 | 
Gene Structure
Nucleotide Length:579 bp
Transcript Length:579 bp
Protein Length:192 aa
Strand:+
Location:Scaffold000295: 342552 : 343130
Gene CDSs(1): 1-579 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 151 163 NANot foundNot found
Segsegseg 164 180 NANot foundNot found
Segsegseg 9 19 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9MAN14e-54NGA3_ARATH B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1
TrEMBL
Best HitE_value Description
C3VMM44e-53C3VMM4_ARATH NGATHA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1631(16 genes,8 taxa):Arabidopsis thalianaAT1G01030.1
ORTHOMCL1631(16 genes,8 taxa):Arabidopsis thalianaAT2G46870.1
ORTHOMCL1631(16 genes,8 taxa):Brassica oleraceaBol004897
ORTHOMCL1631(16 genes,8 taxa):Brassica oleraceaBol005654
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra000434
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra004501
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra030497
ORTHOMCL1631(16 genes,8 taxa):Brassica rapaBra033294
ORTHOMCL1631(16 genes,8 taxa):Vitis viniferaGSVIVT01027463001
ORTHOMCL1631(16 genes,8 taxa):Oryza sativaOs03t0120900-01
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0002s18260.1
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.1
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.2
ORTHOMCL1631(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s10290.3
ORTHOMCL1631(16 genes,8 taxa):Sorghum bicolorSb01g049150.1
ORTHOMCL1631(16 genes,8 taxa):Carica papayaevm.TU.supercontig_57.70
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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