Basic Information
Gene Model:Bol005622
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000296
Sequence:
 | 
Gene Structure
Nucleotide Length:2854 bp
Transcript Length:1719 bp
Protein Length:572 aa
Strand:+
Location:C07: 24491992 : 24494845
Gene CDSs(3): 1-309 | 1375-2315 | 2386-2854 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 1 555 3.2e-21IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR21576UNCHARACTERIZED NODU 1 572 3.1e-200Not foundNot found
HMMPfamPF06813Nodulin-like 7 253 1.5e-140IPR010658Nodulin-like
Segsegseg 236 254 NANot foundNot found
Segsegseg 437 456 NANot foundNot found
Segsegseg 166 176 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q5PP190.0Q5PP19_ARATH At5g45275 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT1G31470.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT3G01630.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT4G19450.1
ORTHOMCL485(27 genes,8 taxa):Arabidopsis thalianaAT5G45275.1
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000471
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol000969
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol003705
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol005622
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol011675
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol022863
ORTHOMCL485(27 genes,8 taxa):Brassica oleraceaBol029867
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra012543
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra013398
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra020961
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra021958
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra023189
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra025086
ORTHOMCL485(27 genes,8 taxa):Brassica rapaBra039106
ORTHOMCL485(27 genes,8 taxa):Vitis viniferaGSVIVT01036919001
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs11t0107400-01
ORTHOMCL485(27 genes,8 taxa):Oryza sativaOs12t0106500-00
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0001s01040.1
ORTHOMCL485(27 genes,8 taxa):Populus trichocarpaPOPTR_0003s10470.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb05g000610.1
ORTHOMCL485(27 genes,8 taxa):Sorghum bicolorSb08g000640.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_3403.1
ORTHOMCL485(27 genes,8 taxa):Carica papayaevm.TU.supercontig_73.58
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:24038371..25038387 (-)A.thalianaChr5:18042971..18538196 (+)39
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:24265366..25262627 (+)B.rapaA09:25893954..26277958 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
VAT5G452751833440518337380Chr5Subgenome_III(LF)44
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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