Basic Information
Gene Model:Bol005583
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000297
Sequence:
 | 
Gene Structure
Nucleotide Length:5222 bp
Transcript Length:3786 bp
Protein Length:1261 aa
Strand:+
Location:C03: 9400664 : 9405885
Gene CDSs(10): 1-1275 | 1609-2326 | 2396-2532 | 3051-3274 | 3357-3673 | 3758-4017 | 4137-4337 | 4410-4585 | 4669-4723 | 4800-5222 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.300no description 976 1225 8.6e-78Not foundNot found
Gene3DG3DSA:3.40.50.300no description 386 554 2.5e-33Not foundNot found
Segsegseg 819 836 NANot foundNot found
Segsegseg 590 608 NANot foundNot found
Segsegseg 455 467 NANot foundNot found
Segsegseg 527 536 NANot foundNot found
Segsegseg 382 393 NANot foundNot found
Segsegseg 151 162 NANot foundNot found
Segsegseg 51 76 NANot foundNot found
Segsegseg 33 42 NANot foundNot found
HMMSmartSM00382no description 1025 1217 9.8e-15IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 448 706 0.29IPR003593ATPase, AAA+ type, core
HMMPantherPTHR19242ATP-BINDING CASSETTE 54 1238 0Not foundNot found
HMMPantherPTHR19242:SF96MULTIDRUG RESISTANCE 54 1238 0Not foundNot found
superfamilySSF52540P-loop containing nu 410 554 6.9e-32Not foundNot found
superfamilySSF90123Multidrug resistance 648 989 1.9e-52IPR011527ABC transporter, transmembrane region, type 1
superfamilySSF52540P-loop containing nu 987 1224 4.4e-70Not foundNot found
superfamilySSF90123Multidrug resistance 72 402 2.3e-62IPR011527ABC transporter, transmembrane region, type 1
ProfileScanPS50929ABC_TM1F 675 962 39.431IPR017940ABC transporter integral membrane type 1
ProfileScanPS50893ABC_TRANSPORTER_2 998 1234 25.624IPR003439ABC transporter-like
ProfileScanPS50929ABC_TM1F 99 386 44.181IPR017940ABC transporter integral membrane type 1
ProfileScanPS50893ABC_TRANSPORTER_2 421 665 11.545IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 1026 1210 1.1e-68IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 449 552 4.1e-32IPR003439ABC transporter-like
HMMPfamPF00664ABC_membrane 715 951 2.8e-48IPR001140ABC transporter, transmembrane region
HMMPfamPF00664ABC_membrane 97 374 9.8e-42IPR001140ABC transporter, transmembrane region
PatternScanPS00211ABC_TRANSPORTER_1 1137 1151 NAIPR017871ABC transporter, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
GO:0042626 Molecular Function ATPase activity, coupled to transmembrane movement of substances
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9ZR720.0AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2V6060.0Q2V606_BRACM ABC transporter-like protein OS=Brassica campestris PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_13546500.0K05658ABCB1ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT1G02520.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT1G02530.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT1G10680.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT1G27940.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT1G28010.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT2G36910.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT2G39480.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT2G47000.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28345.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28360.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28380.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28390.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28415.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G28860.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G55320.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT3G62150.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT4G01820.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT4G01830.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT4G18050.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT4G25960.1
ORTHOMCL8(185 genes,8 taxa):Arabidopsis thalianaAT5G46540.1
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol001154
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol002097
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol002511
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol003424
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol005583
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol010849
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol016241
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol020428
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol021813
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol031218
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol032261
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol032262
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol036702
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol037081
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol037695
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol039579
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol040758
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol041453
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol042262
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol042991
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol043059
ORTHOMCL8(185 genes,8 taxa):Brassica oleraceaBol044206
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra000136
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra002094
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra003445
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra003490
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra004484
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra005036
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra012621
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra013936
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra014756
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra017216
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra017539
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra019135
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra019907
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra023087
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra025326
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra025328
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra025331
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra025359
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra025425
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra027534
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra030503
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra032856
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra032864
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra033043
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra033331
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra039042
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra039055
ORTHOMCL8(185 genes,8 taxa):Brassica rapaBra040475
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01000580001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01007586001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01009946001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01011381001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01013125001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01014625001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01015306001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01016617001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01016706001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01017696001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01021365001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01021366001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01025040001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01028256001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01032578001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01032898001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01033645001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01036801001
ORTHOMCL8(185 genes,8 taxa):Vitis viniferaGSVIVT01038687001
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0533900-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0533900-02
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0695700-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0723800-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0723800-02
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0976050-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs01t0976100-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs02t0189800-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs02t0190000-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs02t0190300-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs02t0693700-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs02t0693700-02
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs03t0181750-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs03t0280000-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs04t0459000-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs04t0481700-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs04t0642000-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs04t0642000-02
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs05t0137200-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs05t0548300-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs05t0548500-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0153000-00
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0564300-01
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0564300-03
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0564300-04
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0564300-05
ORTHOMCL8(185 genes,8 taxa):Oryza sativaOs08t0564300-06
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0001s02200.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0001s02220.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0001s16560.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0001s34280.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0001s44320.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0002s02110.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0002s18850.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0002s18860.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0002s18860.2
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0003s09320.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0003s09320.2
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0006s07370.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0006s07390.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0006s12590.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0008s05020.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0010s00540.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0010s21720.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0011s13720.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0014s10860.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0014s10870.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0014s10880.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0014s10880.2
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0015s00250.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0016s09680.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0017s11030.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0017s11750.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0017s12120.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0018s09420.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0018s13810.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0018s13820.1
ORTHOMCL8(185 genes,8 taxa):Populus trichocarpaPOPTR_0228s00200.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb01g039110.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb02g019540.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g011860.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g023740.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g031990.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g032000.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g032030.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g033290.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb03g047490.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb04g006087.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb04g006090.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb04g006100.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb04g022480.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb04g031170.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb06g001440.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb06g018860.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb06g020350.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb06g030350.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb07g003510.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb07g003520.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb07g023730.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb09g002940.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb09g027320.1
ORTHOMCL8(185 genes,8 taxa):Sorghum bicolorSb09g027330.1
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_1.333
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_1.334
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_102.35
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_102.36
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_14.15
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_14.71
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_25.157
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_3.195
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_40.96
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_57.7
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_57.8
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_90.56
ORTHOMCL8(185 genes,8 taxa):Carica papayaevm.TU.supercontig_97.62
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8884096..9884630 (+)B.rapaA09:10284578..11176845 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G369101550201415507320Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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