Basic Information
Gene Model:Bol005548
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000297
Sequence:
 | 
Gene Structure
Nucleotide Length:1986 bp
Transcript Length:780 bp
Protein Length:259 aa
Strand:-
Location:C03: 9654071 : 9656056
Gene CDSs(5): 1-200 | 1018-1080 | 1186-1537 | 1752-1913 | 1984-1986 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 24 157 4.3e-12IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 49 164 2.5e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1639e-305NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZUS11e-138Q9ZUS1_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At2g37460/F3G5.25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8583710..11315567 (+)A.thalianaChr2:14891102..16835711 (+)226
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:8884096..9884630 (+)B.rapaA09:10284578..11176845 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G374601572644815729098Chr2Subgenome_II249
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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