Basic Information
Gene Model:Bol005405
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000300
Sequence:
 | 
Gene Structure
Nucleotide Length:1255 bp
Transcript Length:846 bp
Protein Length:281 aa
Strand:-
Location:C06: 15619264 : 15620518
Gene CDSs(4): 1-78 | 304-751 | 843-913 | 1007-1255 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 11 104 14.269IPR003340Transcriptional factor B3
HMMPfamPF02362B3 12 106 3.2e-24IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 3 106 1.4e-30Not foundNot found
Segsegseg 119 149 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8LAV55e-81REM20_ARATH B3 domain-containing protein REM20 OS=Arabidopsis thaliana GN=REM20 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SUV73e-17C0SUV7_ARATH Putative uncharacterized protein At1g16640 (Fragment) OS=Arabidopsis thaliana GN=At1g16640 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18627(3 genes,3 taxa):Arabidopsis thalianaAT3G53310.1
ORTHOMCL18627(3 genes,3 taxa):Brassica oleraceaBol005405
ORTHOMCL18627(3 genes,3 taxa):Brassica rapaBra003130
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:15454467..15995785 (+)A.thalianaChr3:19721994..19977439 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:15459907..16067330 (+)B.rapaA09:10781750..11184546 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G533101976666419768599Chr3Subgenome_II73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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