Basic Information
Gene Model:Bol005373
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000300
Sequence:
 | 
Gene Structure
Nucleotide Length:2144 bp
Transcript Length:867 bp
Protein Length:288 aa
Strand:-
Location:C06: 15968881 : 15971024
Gene CDSs(12): 1-141 | 216-308 | 385-463 | 793-851 | 953-1030 | 1128-1209 | 1296-1344 | 1423-1484 | 1649-1716 | 1809-1864 | 1947-1994 | 2093-2144 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00156Pribosyltran 130 241 3.5e-13IPR000836Phosphoribosyltransferase
HMMPantherPTHR10285URIDINE KINASE RELAT 52 288 1.3e-107Not foundNot found
HMMPantherPTHR10285:SF1URACIL PHOSPHORIBOSY 52 288 1.3e-107Not foundNot found
Gene3DG3DSA:3.40.50.2020no description 63 288 1.6e-63Not foundNot found
superfamilySSF53271PRTase-like 63 288 2.6e-60Not foundNot found
HMMTigrTIGR01091upp: uracil phosphor 78 288 1.5e-84IPR005765Uracil phosphoribosyl transferase
Segsegseg 30 45 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004845 Molecular Function uracil phosphoribosyltransferase activity
GO:0006223 Biological Process uracil salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P933941e-104UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M3361e-143Q9M336_ARATH Uracil phosphoribosyltransferase-like protein OS=Arabidopsis thaliana GN=F5K20_200 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G539001e-144K00761E2.4.2.9, uppuracil phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9997(8 genes,7 taxa):Arabidopsis thalianaAT3G53900.2
ORTHOMCL9997(8 genes,7 taxa):Brassica oleraceaBol005373
ORTHOMCL9997(8 genes,7 taxa):Brassica rapaBra007034
ORTHOMCL9997(8 genes,7 taxa):Vitis viniferaGSVIVT01034092001
ORTHOMCL9997(8 genes,7 taxa):Populus trichocarpaPOPTR_0006s09200.1
ORTHOMCL9997(8 genes,7 taxa):Populus trichocarpaPOPTR_0006s09200.2
ORTHOMCL9997(8 genes,7 taxa):Sorghum bicolorSb09g022320.1
ORTHOMCL9997(8 genes,7 taxa):Carica papayaevm.TU.supercontig_56.22
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:15454467..15995785 (+)A.thalianaChr3:19721994..19977439 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:15459907..16067330 (+)B.rapaA09:10781750..11184546 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G539001995665619959041Chr3Subgenome_II73
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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