Basic Information
Gene Model:Bol005348
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000301
Sequence:
 | 
Gene Structure
Nucleotide Length:1317 bp
Transcript Length:1317 bp
Protein Length:438 aa
Strand:+
Location:Scaffold000301: 209407 : 210723
Gene CDSs(1): 1-1317 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF48371ARM repeat 74 414 5.4e-32IPR016024Armadillo-type fold
superfamilySSF57850RING/U-box 17 103 1.5e-15Not foundNot found
Segsegseg 401 412 NANot foundNot found
Segsegseg 270 284 NANot foundNot found
HMMPfamPF04564U-box 33 107 4.2e-31IPR003613U box domain
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 35 111 2.5e-13Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 35 111 2.5e-13Not foundNot found
Gene3DG3DSA:3.30.40.10no description 30 107 3.1e-26Not foundNot found
Gene3DG3DSA:1.25.10.10no description 216 414 1e-07IPR011989Armadillo-like helical
HMMSmartSM00504no description 37 100 7.3e-29IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q5PNY60.0PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3ECH81e-123Q3ECH8_ARATH Putative uncharacterized protein At1g66160.2 OS=Arabidopsis thaliana GN=At1g66160 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cin:1001834174e-07K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1604(17 genes,8 taxa):Arabidopsis thalianaAT5G37490.1
ORTHOMCL1604(17 genes,8 taxa):Brassica oleraceaBol005348
ORTHOMCL1604(17 genes,8 taxa):Brassica rapaBra025442
ORTHOMCL1604(17 genes,8 taxa):Brassica rapaBra039752
ORTHOMCL1604(17 genes,8 taxa):Vitis viniferaGSVIVT01011616001
ORTHOMCL1604(17 genes,8 taxa):Oryza sativaOs02t0738200-01
ORTHOMCL1604(17 genes,8 taxa):Oryza sativaOs03t0240600-01
ORTHOMCL1604(17 genes,8 taxa):Oryza sativaOs06t0248500-00
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0004s08220.1
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0008s13700.1
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0010s11370.1
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0012s03960.1
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0015s05380.1
ORTHOMCL1604(17 genes,8 taxa):Populus trichocarpaPOPTR_0017s02470.1
ORTHOMCL1604(17 genes,8 taxa):Sorghum bicolorSb01g041450.1
ORTHOMCL1604(17 genes,8 taxa):Sorghum bicolorSb04g028560.1
ORTHOMCL1604(17 genes,8 taxa):Carica papayaevm.TU.contig_45436.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo