Basic Information
Gene Model:Bol005247
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000304
Sequence:
 | 
Gene Structure
Nucleotide Length:684 bp
Transcript Length:684 bp
Protein Length:227 aa
Strand:+
Location:C07: 17994758 : 17995441
Gene CDSs(1): 1-684 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 175 227 7.1e-08IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 172 212 0.017IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 143 168 NANot foundNot found
Segsegseg 172 183 NANot foundNot found
Segsegseg 113 127 NANot foundNot found
ProfileScanPS50888HLH 156 212 9.397IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 169 217 0.007IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ASX97e-80BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0Z2889e-79C0Z288_ARATH AT1G29950 protein OS=Arabidopsis thaliana GN=AT1G29950 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5687(10 genes,6 taxa):Arabidopsis thalianaAT1G29950.1
ORTHOMCL5687(10 genes,6 taxa):Brassica oleraceaBol005247
ORTHOMCL5687(10 genes,6 taxa):Brassica rapaBra030184
ORTHOMCL5687(10 genes,6 taxa):Oryza sativaOs02t0315600-01
ORTHOMCL5687(10 genes,6 taxa):Oryza sativaOs02t0315600-02
ORTHOMCL5687(10 genes,6 taxa):Oryza sativaOs02t0315600-03
ORTHOMCL5687(10 genes,6 taxa):Populus trichocarpaPOPTR_0011s02710.1
ORTHOMCL5687(10 genes,6 taxa):Populus trichocarpaPOPTR_0011s02710.2
ORTHOMCL5687(10 genes,6 taxa):Sorghum bicolorSb10g019120.1
ORTHOMCL5687(10 genes,6 taxa):Sorghum bicolorSb10g022460.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:16414492..18130108 (+)A.thalianaChr2:14265450..14558697 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:17304914..18389706 (+)B.rapaA09:33625351..34380807 (+)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G299501049169810494598Chr1Subgenome_I118
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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