Basic Information
Gene Model:Bol005156
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000307
Sequence:
 | 
Gene Structure
Nucleotide Length:1084 bp
Transcript Length:669 bp
Protein Length:222 aa
Strand:+
Location:C04: 39223872 : 39224955
Gene CDSs(5): 1-103 | 204-310 | 401-478 | 573-643 | 775-1084 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52172CheY-like 6 188 2.2e-25IPR011006CheY-like
HMMPfamPF00072Response_reg 11 138 2.7e-19IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 3 160 1.8e-22Not foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 11 152 5.8e-15Not foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 10 147 25.814IPR001789Signal transduction response regulator, receiver region
Segsegseg 148 161 NANot foundNot found
HMMSmartSM00448no description 9 143 5.6e-17IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803652e-94ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRG33e-93Q0WRG3_ARATH Putative two-component response regulator 3 protein OS=Arabidopsis thaliana GN=At2g41310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G413104e-94K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1316(18 genes,8 taxa):Arabidopsis thalianaAT2G41310.1
ORTHOMCL1316(18 genes,8 taxa):Arabidopsis thalianaAT3G57040.1
ORTHOMCL1316(18 genes,8 taxa):Brassica oleraceaBol005156
ORTHOMCL1316(18 genes,8 taxa):Brassica oleraceaBol045476
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra003265
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra007295
ORTHOMCL1316(18 genes,8 taxa):Brassica rapaBra016943
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01013497001
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01013505001
ORTHOMCL1316(18 genes,8 taxa):Vitis viniferaGSVIVT01033610001
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs11t0143300-01
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs11t0143300-02
ORTHOMCL1316(18 genes,8 taxa):Oryza sativaOs12t0139400-00
ORTHOMCL1316(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s03950.1
ORTHOMCL1316(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s03750.1
ORTHOMCL1316(18 genes,8 taxa):Sorghum bicolorSb05g002590.1
ORTHOMCL1316(18 genes,8 taxa):Sorghum bicolorSb08g001140.1
ORTHOMCL1316(18 genes,8 taxa):Carica papayaevm.TU.supercontig_5.205
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38913855..39428485 (+)B.rapaA09:12270082..12793029 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G413101722193317224427Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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