Basic Information
Gene Model:Bol005150
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C04
Scaffold:Scaffold000307
Sequence:
 | 
Gene Structure
Nucleotide Length:2869 bp
Transcript Length:1602 bp
Protein Length:533 aa
Strand:-
Location:C04: 39163772 : 39166640
Gene CDSs(10): 1-93 | 212-318 | 413-578 | 656-791 | 921-1140 | 1347-1527 | 1600-1623 | 1703-1917 | 2336-2598 | 2673-2869 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 307 322 NANot foundNot found
Segsegseg 506 521 NANot foundNot found
Segsegseg 13 25 NANot foundNot found
Segsegseg 39 53 NANot foundNot found
HMMPfamPF01490Aa_trans 143 527 9.9e-55IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 144 533 7.8e-100Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P470822e-30AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae GN=AVT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
O806680.0O80668_ARATH Expressed protein OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002525111e-25K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2480(14 genes,8 taxa):Arabidopsis thalianaAT2G41190.1
ORTHOMCL2480(14 genes,8 taxa):Brassica oleraceaBol005150
ORTHOMCL2480(14 genes,8 taxa):Brassica oleraceaBol006909
ORTHOMCL2480(14 genes,8 taxa):Brassica oleraceaBol020568
ORTHOMCL2480(14 genes,8 taxa):Brassica rapaBra000217
ORTHOMCL2480(14 genes,8 taxa):Brassica rapaBra004605
ORTHOMCL2480(14 genes,8 taxa):Brassica rapaBra016949
ORTHOMCL2480(14 genes,8 taxa):Vitis viniferaGSVIVT01033627001
ORTHOMCL2480(14 genes,8 taxa):Oryza sativaOs02t0788800-02
ORTHOMCL2480(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s03700.1
ORTHOMCL2480(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s03700.2
ORTHOMCL2480(14 genes,8 taxa):Sorghum bicolorSb04g035500.1
ORTHOMCL2480(14 genes,8 taxa):Sorghum bicolorSb04g035520.1
ORTHOMCL2480(14 genes,8 taxa):Carica papayaevm.TU.supercontig_5.164
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38913855..39428485 (+)B.rapaA09:12270082..12793029 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G411901716727917170407Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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