Basic Information
Gene Model:Bol005139
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000307
Sequence:
 | 
Gene Structure
Nucleotide Length:2156 bp
Transcript Length:1854 bp
Protein Length:617 aa
Strand:-
Location:C04: 39116930 : 39119085
Gene CDSs(2): 1-434 | 737-2156 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00170bZIP_1 162 225 3.5e-13IPR011616bZIP transcription factor, bZIP-1
Coilcoilcoiled-coil 189 210 NANot foundNot found
HMMSmartSM00338no description 161 226 1.7e-15IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 170 199 1.7e-09Not foundNot found
Segsegseg 570 581 NANot foundNot found
Segsegseg 289 303 NANot foundNot found
Segsegseg 225 239 NANot foundNot found
Segsegseg 157 167 NANot foundNot found
Gene3DG3DSA:1.20.5.170no description 166 227 8.9e-05Not foundNot found
ProfileScanPS50217BZIP 164 224 10.128IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P142333e-23TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1
TrEMBL
Best HitE_value Description
O222080.0O22208_ARATH BZIP family transcription factor OS=Arabidopsis thaliana GN=At2g40950 PE=3 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6063(10 genes,7 taxa):Arabidopsis thalianaAT2G40950.1
ORTHOMCL6063(10 genes,7 taxa):Arabidopsis thalianaAT3G56660.1
ORTHOMCL6063(10 genes,7 taxa):Brassica oleraceaBol005139
ORTHOMCL6063(10 genes,7 taxa):Brassica oleraceaBol006897
ORTHOMCL6063(10 genes,7 taxa):Brassica rapaBra016959
ORTHOMCL6063(10 genes,7 taxa):Vitis viniferaGSVIVT01025788001
ORTHOMCL6063(10 genes,7 taxa):Populus trichocarpaPOPTR_0006s03300.1
ORTHOMCL6063(10 genes,7 taxa):Populus trichocarpaPOPTR_0016s03220.1
ORTHOMCL6063(10 genes,7 taxa):Sorghum bicolorSb09g020320.1
ORTHOMCL6063(10 genes,7 taxa):Carica papayaevm.TU.supercontig_92.68
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38913855..39428485 (+)B.rapaA09:12270082..12793029 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G409501708762017090424Chr2Subgenome_I257
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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