Basic Information
Gene Model:Bol005135
Gene Family:Not classificated
Gene Structure
Nucleotide Length:2051 bp
Transcript Length:1164 bp
Protein Length:387 aa
Location:C04: 39100106 : 39102156
Gene CDSs(7): 1-259 | 345-496 | 578-736 | 1100-1325 | 1494-1610 | 1710-1772 | 1864-2051 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 189 318 1.4e-07IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 20 153 1.4e-13IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 281 317 NANot foundNot found
Segsegseg 136 147 NANot foundNot found
Segsegseg 48 59 NANot foundNot found
superfamilySSF103481Multidrug resistance 214 325 1.8e-07Not foundNot found
superfamilySSF103481Multidrug resistance 45 160 3.7e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Best HitE_value Description
Q6J1632e-535NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
Best HitE_value Description
O222040.0O22204_ARATH Putative integral membrane protein nodulin OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL12799(6 genes,3 taxa):Arabidopsis thalianaAT2G40900.1
ORTHOMCL12799(6 genes,3 taxa):Brassica oleraceaBol005135
ORTHOMCL12799(6 genes,3 taxa):Brassica oleraceaBol006895
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra000212
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra004592
ORTHOMCL12799(6 genes,3 taxa):Brassica rapaBra016963
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34667219..39428485 (+)A.thalianaChr2:13829420..17464161 (+)433
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:38913855..39428485 (+)B.rapaA09:12270082..12793029 (+)19
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.